3.25.06.0 - Rhea

Xmipp Programs

• New programs

  • continuous_create_residuals: Make better residuals by continuous assignment updates to projections
  • tomo_detect_landmarks: to detect landmarks in tilt series (TS)
  • tomo_calculate_landmark_residuals: to calculate residuals in TS
  • tomo_detect_misalignment_residuals: to detect misalignment from residuals in TS
  • batch_tomo_misalignment_resid_statistics: Python script to calculate statistical metrics from a set of residuals
  • tomo_tiltseries_detect_misalignment_corr: (to legacy) for calculating relative shifts between tilt images, as a prealignment strategy

• Programs updated

  • Particle subtraction: now generates a single stack + includes noise power estimation
  • classify_pca: allows setting CUDA_DEVICE for NVIDIA drivers ≤ 470

• Programs fixed

  • Fixed missing b in angular_continuous_assign2_gpu
  • CUDAFFT test fixed
  • Minor compatibility fixes for CUDA 12.6
  • DT_SChar added to micrographs

Installation and user guide

• Fixed broken links in documentation
• Enhanced data collection steps (context suggests improvements in reproducibility or logging)

More Xmipp

• DLTK environments: channels limited to conda-forge and pip. Updated deepEMhancer version and models, update all enviroments
• Allowing to skip sorting in metadata_vec::split