Releases: IBM/AutoPeptideML
Releases · IBM/AutoPeptideML
v.1.0.5
What's Changed
- 🧹🛠️🪲: Patch and incorporate new PLMs by @RaulFD-creator in #35
- 🪲 Bug fix: Missing first token in for full sequence embedding by @RaulFD-creator in #36
- 🛠️ Dev: typer CLI instead of argparse by @RaulFD-creator in #37
- 🛠️ Code-dev: Backend for model storage
onnx
(see #33) by @RaulFD-creator in #40 - 🛠️🧹: Minor patches and code cleanliness improvements by @RaulFD-creator in #42
- New
onnx
models Zenodo link and Optuna sampler bug fix by @RaulFD-creator in #43
Full Changelog: v.1.0.4...v.1.0.5
v.1.0.4
What's Changed
- 🧹🤖 Simplified requirements, testing in more distributions by @RaulFD-creator in #32
- 🛠️🪲📝: Improvements to
prediction
mode by @RaulFD-creator in #34
Full Changelog: v.1.0.3...v.1.0.4
v.1.0.3
What's Changed
- 🛠️ Code-dev: Updated homology partitioning to Hestia (v.0.0.32) by @RaulFD-creator in #30
- 🛠️ Code-dev: Update default parameters (see #24) by @RaulFD-creator in #31
Full Changelog: v.1.0.2...v.1.0.3
v.1.0.2
What's Changed
- 🧹 Tidy code: Improved documentation and fixed compatibility issues with Hestia by @RaulFD-creator in #22
- 🛠️ Code-dev: Add support for additional devices by @RaulFD-creator in #23
- 🛠️ Code-dev: Extend RepresentationEngine + Enforce no train-test overlap by @RaulFD-creator in #25
- 🕵️♂️ Test: Update APML tests by @RaulFD-creator in #26
- 📝 Docs: Representation Engine documentation by @RaulFD-creator in #27
- Minor modifications + Bug fix with label name by @RaulFD-creator in #28
Full Changelog: v.1.0.1...v.1.0.2
v.1.0.1
What's Changed
- 🪲 Bug fix: Compatibility with Hestia 0.0.19 fixed by @RaulFD-creator in #21
Full Changelog: v.1.0.0...v.1.0.1
First Official version
What's Changed
- Prepare version for official launch with publication by @RaulFD-creator in #20
Full Changelog: v.0.3.4...v.1.0.0
v.0.3.4
What's Changed
- Code dev by @RaulFD-creator in #19
Summary
- 🪲 Bug fix with RepresentationEngine
- 🤖 Automation for running tests before and after merging to main branch
- 🕵️♂️ Tests: RepresentationEngine tests for ESM, Rostlab, and Elnaggar families
Full Changelog: v.0.3.3...v.0.3.4
v.0.3.3
v.0.3.2
What's Changed
- Pre v.0.3.2 by @RaulFD-creator in #17
Added support for Ankh models.
Full Changelog: v.0.3.1...v.0.3.2
v.0.3.1
What's Changed
- V.0.3.1 by @RaulFD-creator in #15
- 🪲 Bug fix: Update setup to new version by @RaulFD-creator in #16
Full Changelog: v.0.3.0...v.0.3.1