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Add check_pixels.py script #55

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Add check_pixels.py script #55

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cae51e9
Add check_pixels.py script
will-moore May 16, 2023
b77c1f6
Add --max-images argument. Remove logfile
will-moore Nov 10, 2023
66867d1
max-images is per Plate/Fileset
will-moore Nov 10, 2023
a141fb6
Don't assume exception has message
will-moore Nov 22, 2023
2fbe5f5
Use max_images on IDR data to match test data
will-moore Nov 22, 2023
250f35c
Add support for --max-planes=sizeC
will-moore Nov 27, 2023
dfb9de8
Include image.name in Error logs
will-moore Dec 12, 2023
137774a
Add --timing option to check times for getPlanes()
will-moore Jan 18, 2024
1f4c0ba
Fix ratio of local/IDR timing
will-moore Jan 18, 2024
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Include image.name in Error logs
@will-moore
will-moore committed Dec 12, 2023
commit dfb9de81e1634ab8caf01341e48329bbbaf350eb
4 changes: 2 additions & 2 deletions scripts/check_pixels.py
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Original file line number Diff line number Diff line change
@@ -49,9 +49,9 @@ def check_image(idr_conn, image, max_planes):

for plane, idr_plane, idx in zip(planes, idr_planes, zctList):
if not np.array_equiv(plane, idr_plane):
log("Error: Mismatch for Image: %s at plane (z, c, t): %s" % (image.id, idx))
log("Error: Mismatch for Image:%s %s at plane (z, c, t): %s" % (image.id, image.name, idx))
except Exception as ex:
log("Error: Image:%s %s" % (image.id, ex))
log("Error: Image:%s %s %s" % (image.id, image.name, ex))


def get_object(conn, obj_string):