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@IGC-Advanced-Imaging-Resource

IGC Advanced Imaging Resource

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  1. ImageJ_Macros Public

    ImageJ and FIJI macros written for users of the IGC AIR facility.

    ImageJ Macro

  2. QuPath Public

    QuPath Scripts written for users of the IGC AIR facility.

    Groovy

  3. CellProfiler Public

    CellProfiler Pipelines written for users of the IGC AIR facility.

  4. JOBS Public

    Files that allow custom acquisition using the Nikon JOBS Modules - https://www.microscope.healthcare.nikon.com/en_EU/products/software/nis-elements/nis-elements-jobs

  5. Python Public

    Python Scripts written for users of the IGC AIR facility.

  6. R Public

    R Scripts written for users of the IGMM AIR facility.

    R

Repositories

Showing 10 of 16 repositories
  • image-analysis-python-napari Public
    Jupyter Notebook 1 1 0 0 Updated Apr 1, 2025
  • Dodd2023_Paper Public

    ImageJ Script from in Dodd, et al., 2023

    ImageJ Macro 0 MIT 0 0 0 Updated Jul 24, 2023
  • MethodsJ2 Public

    MethodsJ2 is a tool which can be used to automatically generate materials & methods text for image data captured on AIR microscopes

    0 MIT 0 0 0 Updated Apr 27, 2023
  • Hall2022_Paper Public

    ImageJ Scripts and CellProfiler Pipelines published with Hall, et al., 2023

    ImageJ Macro 0 MIT 0 0 0 Updated Feb 22, 2023
  • JimenezMoreno_2022 Public

    Tools used for Tolles:YPet reporter paper

    ImageJ Macro 0 MIT 0 0 0 Updated Feb 10, 2023
  • Python Public

    Python Scripts written for users of the IGC AIR facility.

    0 MIT 0 0 0 Updated Apr 8, 2022
  • Boumendil2020_BRD4paper Public

    ImageJ Script used in Olley, et al., 2019

    ImageJ Macro 0 MIT 0 0 0 Updated Apr 8, 2022
  • Quidwai2020_WDR35paper Public

    ImageJ Scripts used in Quidwai, et al., 2020

    ImageJ Macro 0 MIT 0 0 0 Updated Apr 8, 2022
  • Tennant2020_FIVERpaper Public

    QuPath scripts and Nikon JOBs workflow used in Tennant, et al., 2020

    Groovy 0 MIT 0 0 0 Updated Apr 8, 2022
  • Purshouse2022_paper Public

    ImageJ scripts used in Purshouse, et al., 2022

    ImageJ Macro 0 MIT 0 0 0 Updated Apr 8, 2022
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