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DSERV-1230 removing proteins from autocomplete #657

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DSERV-1230 removing proteins from autocomplete #657

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15 changes: 4 additions & 11 deletions src/routers/datatypeRouters/autocomplete.ts
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Original file line number Diff line number Diff line change
Expand Up @@ -17,23 +17,16 @@ const autocompleteFormat = z.object({
uri: z.string()
})

// currently supports: gene, protein, and disease
// currently supports genes only
async function autocompleteQuery (input: paramsFormatType): Promise<any[]> {
const term = (input.term as string).toUpperCase()

const query = `
LET genes = (FOR gene in genes
FOR gene in genes
FILTER STARTS_WITH(gene.name, "${term}")
RETURN { type: "gene", term: gene.name, uri: CONCAT("/genes/", gene._key) })

LET proteins = (FOR protein in proteins
FILTER STARTS_WITH(protein.name, "${term}") OR (protein.uniprot_names[0] != null AND STARTS_WITH(protein.uniprot_names[0], "${term}"))
RETURN { type: "protein", term: protein.name, uri: CONCAT("/proteins/", protein._key) })

FOR result IN UNION_DISTINCT(genes, proteins)
SORT LENGTH(result.term) ASC
SORT LENGTH(gene.name) ASC
LIMIT ${input.page as number * PAGE_SIZE}, ${PAGE_SIZE}
RETURN result
RETURN { type: "gene", term: gene.name, uri: CONCAT("/genes/", gene._key) }
`
const results = await ((await db.query(query)).all())
return results
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4 changes: 2 additions & 2 deletions src/routers/datatypeRouters/descriptions.ts
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Expand Up @@ -401,8 +401,8 @@ export const descriptions = {
The limit parameter controls the page size and can not exceed 100. <br> \
Pagination is 0-based.',

autocomplete: 'Autocomplete names for genes and proteins based on prefix search.<br> \
Example: term = TP53, <br> \
autocomplete: 'Autocomplete names for genes based on prefix search.<br> \
Example: term = ATF2, <br> \
Pagination is 0-based.',

complex: 'Retrieve complexes.<br> \
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