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Allow saving and loading the 3D grid to and from an HDF5 file #38

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Merged
merged 26 commits into from
Nov 18, 2025
Merged

Allow saving and loading the 3D grid to and from an HDF5 file #38

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6e37e82
build: include static images
elenafuengar Nov 14, 2025
96f493c
build: bump scipy and numpy version in requirements
elenafuengar Nov 14, 2025
2e84315
style: apply ruff suggestions + improve verbose prints
elenafuengar Nov 14, 2025
f528bdd
style: apply Ruffs code quality suggestions
elenafuengar Nov 14, 2025
16563fa
Potential fix for pull request finding 'Except block handles 'BaseExc…
elenafuengar Nov 14, 2025
eab2fe6
feature: add load_from_h5 and save_to_h5 functions
elenafuengar Nov 14, 2025
cb15de0
Potential fix for pull request finding 'Unnecessary pass'
elenafuengar Nov 14, 2025
9d7a27c
Merge branch 'main' into feature/grid-save-load
elenafuengar Nov 14, 2025
a56a42d
fix: MPI test failing fix: re-compute z with the final subdomain samples
elenafuengar Nov 14, 2025
f6180c9
fix: wakis install failed
elenafuengar Nov 14, 2025
965d973
fix: mpi tests_007 passing, fixed typo Nz->NZ
elenafuengar Nov 14, 2025
aeb8066
style: apply RUFFs style suggestions
elenafuengar Nov 14, 2025
22b493b
fix: put 3D plot flag back to false
elenafuengar Nov 14, 2025
5371c96
style: fix Ruffs warnings
elenafuengar Nov 17, 2025
992188a
style: add RUFFs suggestions + remove the `if False` at the end of th…
elenafuengar Nov 17, 2025
a32059c
test: add workflow to run MPI tests on pull request update
elenafuengar Nov 17, 2025
5b0dea7
style: minor improvements and Ruff fixes
elenafuengar Nov 17, 2025
bfff446
style: improve notebook 006 to match CST result, clear outputs
elenafuengar Nov 17, 2025
17001d5
tests: include test functions for load and save grid
elenafuengar Nov 17, 2025
8d31592
style: add Ruffs suggestions + improve load_results to update self.fo…
elenafuengar Nov 17, 2025
45a59de
refact: move verbosity in __init__ to `load_from_h5` and improved inf…
elenafuengar Nov 17, 2025
24d34aa
Merge branch 'main' into feature/grid-save-load
elenafuengar Nov 17, 2025
b0a7169
fix: add logger lines, wrongly skipped during merge + fix MPI workflo…
elenafuengar Nov 18, 2025
9d6e9cf
Merge branch 'main' into feature/grid-save-load
elenafuengar Nov 18, 2025
aeb12c5
reafact+test: fix logger updates and included them in load_from_h5.In…
elenafuengar Nov 18, 2025
5c4e7b5
test: update static dict with use_mpi for MPI tests
elenafuengar Nov 18, 2025
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5 changes: 4 additions & 1 deletion pyproject.toml
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Original file line number Diff line number Diff line change
Expand Up @@ -9,4 +9,7 @@ requires = [
markers = [
"slow: marks tests as slow (deselect with '-m \"not slow\"')",
"serial",
]
]

[tool.setuptools.package-data]
wakis = ["static/img/*.png"]
4 changes: 2 additions & 2 deletions requirements.txt
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Expand Up @@ -74,7 +74,7 @@ nbconvert==7.16.4
nbformat==5.10.4
nest-asyncio==1.6.0
notebook_shim==0.2.4
numpy==1.24.2
numpy==1.26.4
overrides==7.7.0
packaging==24.1
pandocfilters==1.5.1
Expand Down Expand Up @@ -103,7 +103,7 @@ rfc3339-validator==0.1.4
rfc3986-validator==0.1.1
rich==13.7.1
rpds-py==0.18.1
scipy==1.13.1
scipy==1.16.3
scooby==0.10.0
Send2Trash==1.8.3
simpervisor==1.0.0
Expand Down
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