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@JEFworks-Lab

JEFworks Lab

JEFworks Lab at Johns Hopkins University

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  1. STdeconvolve STdeconvolve Public

    Reference-free cell-type deconvolution of multi-cellular spatially resolved transcriptomics data

    R 151 18

  2. STalign STalign Public

    Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping

    HTML 93 23

  3. CRAWDAD CRAWDAD Public

    Cell-type Relationship Analysis Workflow Done Across Distances

    R 38 6

  4. SEraster SEraster Public

    Spatial Experiments raster - a rasterization preprocessing framework for scalable spatial omics data analysis

    R 19 5

  5. STcompare STcompare Public

    STcompare is an R package for comparing spatial gene expression patterns across spatial transcriptomics (ST) datasets

    R 7

  6. STARIT STARIT Public

    Spatial Transcriptomics As Rasterized Tensors (STARIT)

    Jupyter Notebook 1

Repositories

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