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Renv lock r4 2 #1234

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adb36df
fix to driverdrake vignette
Aug 16, 2022
4123d6f
driverdrake_vignette bullets
Aug 17, 2022
6b6553c
change renv lockfile for windows R4.2
Feb 15, 2023
0141452
Merge branch 'develop' into renv_lock_R4-2
Feb 15, 2023
fe4f091
more updates to renv.lock
Feb 22, 2023
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30 changes: 15 additions & 15 deletions renv.lock
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Original file line number Diff line number Diff line change
@@ -1,6 +1,6 @@
{
"R": {
"Version": "4.1.0",
"Version": "4.2.2",
"Repositories": [
{
"Name": "CRAN",
Expand Down Expand Up @@ -123,7 +123,7 @@
},
"cli": {
"Package": "cli",
"Version": "2.5.0",
"Version": "3.6.0",
"Source": "Repository",
"Repository": "CRAN",
"Hash": "a94ba44cee3ea571e813721e64184172"
Expand Down Expand Up @@ -172,10 +172,10 @@
},
"curl": {
"Package": "curl",
"Version": "4.3",
"Version": "5.0.0",
"Source": "Repository",
"Repository": "CRAN",
"Hash": "2b7d10581cc730804e9ed178c8374bd6"
"Hash": "e4f97056611e8e6b8b852d13b7400cf1"
},
"data.table": {
"Package": "data.table",
Expand Down Expand Up @@ -289,7 +289,7 @@
},
"git2r": {
"Package": "git2r",
"Version": "0.29.0",
"Version": "0.30.1",
"Source": "Repository",
"Repository": "CRAN",
"Hash": "b114135c4749076bd5ef74a5827b6f62"
Expand All @@ -303,7 +303,7 @@
},
"glue": {
"Package": "glue",
"Version": "1.4.2",
"Version": "1.6.2",
"Source": "Repository",
"Repository": "CRAN",
"Hash": "6efd734b14c6471cfe443345f3e35e29"
Expand Down Expand Up @@ -345,10 +345,10 @@
},
"igraph": {
"Package": "igraph",
"Version": "1.2.11",
"Version": "1.4.0",
"Source": "Repository",
"Repository": "CRAN",
"Hash": "1d10cd31c2979f9c819ffe4d16b9dc2b"
"Hash": "14734eae03f062b55e794b07784aeddc"
},
"ini": {
"Package": "ini",
Expand Down Expand Up @@ -394,7 +394,7 @@
},
"lifecycle": {
"Package": "lifecycle",
"Version": "1.0.0",
"Version": "1.0.3",
"Source": "Repository",
"Repository": "CRAN",
"Hash": "3471fb65971f1a7b2d4ae7848cf2db8d"
Expand Down Expand Up @@ -436,10 +436,10 @@
},
"openssl": {
"Package": "openssl",
"Version": "1.4.3",
"Version": "2.0.5",
"Source": "Repository",
"Repository": "CRAN",
"Hash": "a399e4773075fc2375b71f45fca186c4"
"Hash": "b04c27110bf367b4daa93f34f3d58e75"
},
"pillar": {
"Package": "pillar",
Expand Down Expand Up @@ -520,7 +520,7 @@
},
"readr": {
"Package": "readr",
"Version": "1.4.0",
"Version": "2.1.4",
"Source": "Repository",
"Repository": "CRAN",
"Hash": "2639976851f71f330264a9c9c3d43a61"
Expand Down Expand Up @@ -555,7 +555,7 @@
},
"rlang": {
"Package": "rlang",
"Version": "0.4.11",
"Version": "1.0.6",
"Source": "Repository",
"Repository": "CRAN",
"Hash": "515f341d3affe0de9e4a7f762efb0456"
Expand All @@ -569,7 +569,7 @@
},
"roxygen2": {
"Package": "roxygen2",
"Version": "7.1.1",
"Version": "7.2.3",
"Source": "Repository",
"Repository": "CRAN",
"Hash": "fcd94e00cc409b25d07ca50f7bf339f5"
Expand Down Expand Up @@ -723,7 +723,7 @@
},
"xml2": {
"Package": "xml2",
"Version": "1.3.2",
"Version": "1.3.3",
"Source": "Repository",
"Repository": "CRAN",
"Hash": "d4d71a75dd3ea9eb5fa28cc21f9585e2"
Expand Down
19 changes: 10 additions & 9 deletions vignettes/driverdrake_vignette.Rmd
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Original file line number Diff line number Diff line change
Expand Up @@ -247,14 +247,14 @@ When running `driver_drake()` with parallelism, the following arguments to `make


### The `clustermq` backend
See the `clustermq` [installation guide](https://cran.r-project.org/web/packages/clustermq/vignettes/userguide.html) for installation instructions and options. `clustermq` requires `R version 3.5` or greater. Note, on Mac and Windows a simple `install.packages("clustermq") is sufficient.
<!-- - explain how to install clustermq package on PIC -->
See the `clustermq` [installation guide](https://cran.r-project.org/web/packages/clustermq/vignettes/userguide.html) for installation instructions and options. `clustermq` requires `R version 3.5` or greater. Note, on Mac and Windows a simple `install.packages("clustermq")` is sufficient.
For using `clustermq` on PIC (PNNL Institutional Computing) we have already installed the full set of required R packages in a shared space as successfully compiling `clustermq` was not straightforward due to compiler version issues. To use `drake` + `clustermq` in PIC a user can:
* Get necessary libraries with: `export R_LIBS=/pic/projects/GCAM/GCAM-libraries/R/x86_64-pc-linux-gnu-library/3.5`
* Load the `zeromq` library with: `module load zeromq/4.1.4`
* Open `R 3.5.1` with: `module load R/3.5.1`
* Open an `R` session and set the global option below
* Run `driver_drake()` with the arguments such as below

* Get necessary libraries with: `export R_LIBS=/pic/projects/GCAM/GCAM-libraries/R/x86_64-pc-linux-gnu-library/3.5`
* Load the `zeromq` library with: `module load zeromq/4.1.4`
* Open `R 3.5.1` with: `module load R/3.5.1`
* Open an `R` session and set the global option below
* Run `driver_drake()` with the arguments such as below


```r
Expand Down Expand Up @@ -390,8 +390,9 @@ vis_drake_graph(plan, from = make.names("L210.RenewRsrc"))


See the `drake` documentation for other features. Some that may be useful with `gcamdata` include
* `outdated(plan)`: lists all of the targets that are outdated
* `predict_runtime(plan)`: `drake` records the time it takes to build each target and uses this to predict the runtime of the next `make()`

* `outdated(plan)`: lists all of the targets that are outdated
* `predict_runtime(plan)`: `drake` records the time it takes to build each target and uses this to predict the runtime of the next `make()`



Expand Down
19 changes: 10 additions & 9 deletions vignettes/driverdrake_vignette.Rmd.orig
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Original file line number Diff line number Diff line change
Expand Up @@ -147,14 +147,14 @@ When running `driver_drake()` with parallelism, the following arguments to `make


### The `clustermq` backend
See the `clustermq` [installation guide](https://cran.r-project.org/web/packages/clustermq/vignettes/userguide.html) for installation instructions and options. `clustermq` requires `R version 3.5` or greater. Note, on Mac and Windows a simple `install.packages("clustermq") is sufficient.
<!-- - explain how to install clustermq package on PIC -->
See the `clustermq` [installation guide](https://cran.r-project.org/web/packages/clustermq/vignettes/userguide.html) for installation instructions and options. `clustermq` requires `R version 3.5` or greater. Note, on Mac and Windows a simple `install.packages("clustermq")` is sufficient.
For using `clustermq` on PIC (PNNL Institutional Computing) we have already installed the full set of required R packages in a shared space as successfully compiling `clustermq` was not straightforward due to compiler version issues. To use `drake` + `clustermq` in PIC a user can:
* Get necessary libraries with: `export R_LIBS=/pic/projects/GCAM/GCAM-libraries/R/x86_64-pc-linux-gnu-library/3.5`
* Load the `zeromq` library with: `module load zeromq/4.1.4`
* Open `R 3.5.1` with: `module load R/3.5.1`
* Open an `R` session and set the global option below
* Run `driver_drake()` with the arguments such as below

* Get necessary libraries with: `export R_LIBS=/pic/projects/GCAM/GCAM-libraries/R/x86_64-pc-linux-gnu-library/3.5`
* Load the `zeromq` library with: `module load zeromq/4.1.4`
* Open `R 3.5.1` with: `module load R/3.5.1`
* Open an `R` session and set the global option below
* Run `driver_drake()` with the arguments such as below

```{r eval = FALSE}
# Load clustermq and set type to multicore
Expand Down Expand Up @@ -233,8 +233,9 @@ vis_drake_graph(plan, from = make.names("L210.RenewRsrc"))


See the `drake` documentation for other features. Some that may be useful with `gcamdata` include
* `outdated(plan)`: lists all of the targets that are outdated
* `predict_runtime(plan)`: `drake` records the time it takes to build each target and uses this to predict the runtime of the next `make()`

* `outdated(plan)`: lists all of the targets that are outdated
* `predict_runtime(plan)`: `drake` records the time it takes to build each target and uses this to predict the runtime of the next `make()`



Expand Down