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@JaneliaSciComp

Howard Hughes Medical Institute

GitHub organization maintained by Scientific Computing Software at HHMI's Janelia Research Campus for use by HHMI staff and external collaborators.

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  1. bigstream bigstream Public

    Tools for distributed alignment of massive images

    Jupyter Notebook 81 21

  2. NIDAQ.jl NIDAQ.jl Public

    National Instruments Data Acquisition Interface

    Julia 47 16

  3. JRCLUST JRCLUST Public

    JRCLUST

    MATLAB 34 22

  4. multifish multifish Public

    EASI-FISH analysis pipeline for spatial transcriptomics

    Jupyter Notebook 34 13

  5. xarray-multiscale xarray-multiscale Public

    scalable multiscale image pyramids in python

    Python 27 3

  6. BigStitcher-Spark BigStitcher-Spark Public

    Running compute-intense parts of BigStitcher distributed

    Java 26 13

Repositories

Showing 10 of 278 repositories
  • easifish Public
    JaneliaSciComp/easifish’s past year of commit activity
    Nextflow 0 BSD-3-Clause 0 0 0 Updated Apr 29, 2025
  • neuronbridge-precompute Public

    Utilities for indexing and transferring of NeuronBridge-related files

    JaneliaSciComp/neuronbridge-precompute’s past year of commit activity
    Python 0 BSD-3-Clause 0 0 0 Updated Apr 28, 2025
  • videoAnnotation Public
    JaneliaSciComp/videoAnnotation’s past year of commit activity
    JavaScript 1 BSD-3-Clause 0 0 0 Updated Apr 28, 2025
  • fileglancer Public

    Browse, share, and publish data in the Janelia file system

    JaneliaSciComp/fileglancer’s past year of commit activity
    TypeScript 1 BSD-3-Clause 0 0 0 Updated Apr 28, 2025
  • videoAnnotation_backend Public
    JaneliaSciComp/videoAnnotation_backend’s past year of commit activity
    Python 0 BSD-3-Clause 0 0 0 Updated Apr 28, 2025
  • EM_recon_pipeline Public

    Pipeline scripts and tools for reconstructing Electron Microscopy volumes.

    JaneliaSciComp/EM_recon_pipeline’s past year of commit activity
    Python 3 BSD-3-Clause 3 0 3 Updated Apr 28, 2025
  • containers Public

    Containers for workflow plugins

    JaneliaSciComp/containers’s past year of commit activity
    Python 0 BSD-3-Clause 0 0 0 Updated Apr 28, 2025
  • pydantic-ome-ngff Public

    Pydantic models for OME-NGFF

    JaneliaSciComp/pydantic-ome-ngff’s past year of commit activity
    Python 23 BSD-3-Clause 3 6 1 Updated Apr 28, 2025
  • zarrcade Public

    Create web-based OME-Zarr galleries

    JaneliaSciComp/zarrcade’s past year of commit activity
    Jupyter Notebook 16 BSD-3-Clause 0 3 0 Updated Apr 27, 2025
  • dis-utilities Public

    Utilities for Data and Information Services

    JaneliaSciComp/dis-utilities’s past year of commit activity
    JavaScript 1 BSD-3-Clause 1 14 1 Updated Apr 25, 2025
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