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@JaneliaSciComp

Howard Hughes Medical Institute

GitHub organization maintained by Scientific Computing Software at HHMI's Janelia Research Campus for use by HHMI staff and external collaborators.

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  1. bigstream bigstream Public

    Tools for distributed alignment of massive images

    Jupyter Notebook 81 21

  2. NIDAQ.jl NIDAQ.jl Public

    National Instruments Data Acquisition Interface

    Julia 48 16

  3. JRCLUST JRCLUST Public

    JRCLUST

    MATLAB 34 22

  4. multifish multifish Public

    EASI-FISH analysis pipeline for spatial transcriptomics

    Jupyter Notebook 34 13

  5. xarray-multiscale xarray-multiscale Public

    scalable multiscale image pyramids in python

    Python 27 3

  6. BigStitcher-Spark BigStitcher-Spark Public

    Running compute-intense parts of BigStitcher distributed

    Java 26 13

Repositories

Showing 10 of 282 repositories
  • pocaduck Public

    PoCADuck is a library for efficiently storing and retrieving vast numbers of point clouds associated with segmentation labels.

    JaneliaSciComp/pocaduck’s past year of commit activity
    Python 2 BSD-3-Clause 0 0 0 Updated May 20, 2025
  • fileglancer-central Public

    Central metadata server for Fileglancer deployments

    JaneliaSciComp/fileglancer-central’s past year of commit activity
    Python 0 BSD-3-Clause 0 0 0 Updated May 20, 2025
  • fileglancer Public

    Browse, share, and publish data in the Janelia file system

    JaneliaSciComp/fileglancer’s past year of commit activity
    TypeScript 1 BSD-3-Clause 0 0 3 Updated May 19, 2025
  • Ax2 Public

    acoustic segmenter

    JaneliaSciComp/Ax2’s past year of commit activity
    Julia 0 BSD-3-Clause 0 0 0 Updated May 19, 2025
  • dis-utilities Public

    Utilities for Data and Information Services

    JaneliaSciComp/dis-utilities’s past year of commit activity
    JavaScript 1 BSD-3-Clause 1 14 1 Updated May 19, 2025
  • flycore-utilities Public

    Utility programs for synchronization with the Fly Facility's FLYF2 database

    JaneliaSciComp/flycore-utilities’s past year of commit activity
    Python 1 BSD-3-Clause 0 0 0 Updated May 19, 2025
  • pydantic-ome-ngff Public

    Pydantic models for OME-NGFF

    JaneliaSciComp/pydantic-ome-ngff’s past year of commit activity
    Python 23 BSD-3-Clause 3 6 1 Updated May 19, 2025
  • EM_recon_pipeline Public

    Pipeline scripts and tools for reconstructing Electron Microscopy volumes.

    JaneliaSciComp/EM_recon_pipeline’s past year of commit activity
    Python 3 BSD-3-Clause 3 0 2 Updated May 19, 2025
  • n5-zstandard Public

    Zstandard Compression for N5

    JaneliaSciComp/n5-zstandard’s past year of commit activity
    Java 1 BSD-3-Clause 1 0 0 Updated May 16, 2025
  • ShroffCelegansModels.jl Public
    JaneliaSciComp/ShroffCelegansModels.jl’s past year of commit activity
    Julia 3 MIT 0 0 41 Updated May 16, 2025
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