This is the repository associated with the publication Single cell BCR and RNA analysis after respiratory virus infection reveals spatiotemporal dynamics of antigen specific B cell response.
This repository contains the code and supporting files necessary to reproduce the analyses reported in the publication.
To re-run the analysis of the scRNA-Seq data, the necessary workflow and scripts can be found in the scripts/scRNAseq_pipeline/ subdirectory.
Scripts necessary to reproduce the analysis of the B-cell receptor sequencing data can be found in the scripts/VDJ_analysis/ subdirectory.