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Bump the all-julia-packages group across 1 directory with 14 updates - #890

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Bump the all-julia-packages group across 1 directory with 14 updates#890
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Updates the requirements on Statistics, Tullio, ForwardDiff, FiniteDifferences, Graphs, PythonPlot, StatsBase, ImageIO, ImageMagick, SimpleWeightedGraphs, ManifoldDiff, Manifolds, StaticArrays and QuartzImageIO to permit the latest version.
Updates Statistics to 1.11.1

Release notes

Sourced from Statistics's releases.

v1.11.1

Statistics v1.11.1

Diff since v1.11.0

Merged pull requests:

Closed issues:

  • The quantile function can return incorrect results for integer arrays (Int8, Int16, Int32) (#119)
Commits

Updates Tullio to 0.3.9

Release notes

Sourced from Tullio's releases.

v0.3.9

Tullio v0.3.9

Diff since v0.3.8

Merged pull requests:

Commits

Updates ForwardDiff to 1.3.3

Release notes

Sourced from ForwardDiff's releases.

v1.3.3

ForwardDiff v1.3.3

Diff since v1.3.2

Merged pull requests:

Commits

Updates FiniteDifferences to 0.12.33

Release notes

Sourced from FiniteDifferences's releases.

v0.12.33

Manually created because tagbot seems to be broken

What's Changed

New Contributors

Full Changelog: JuliaDiff/FiniteDifferences.jl@v0.12.32...v0.12.33

Commits

Updates Graphs to 1.14.0

Release notes

Sourced from Graphs's releases.

v1.14.0

Graphs v1.14.0

Diff since v1.13.4

Merged pull requests:

Closed issues:

  • CI needs updating to properly test ARM/Intel macOS. (#496)
Changelog

Sourced from Graphs's changelog.

v1.14.0 - 2026-02-26

  • (breaking) neighbors, inneighbors, and outneighbors now return an immutable FrozenVector instead of Vector
  • Louvain community detection algorithm
  • Graph views: ReverseView and UndirectedView for directed graphs
  • New graph products: strong_product, disjunctive_product, lexicographic_product, homomorphic_product
  • maximum_clique, clique_number, maximal_independent_sets, maximum_independent_set, independence_number
  • regular_tree generator
  • kruskal_mst now accepts weight vectors
  • is_planar planarity test and planar_maximally_filtered_graph (PMFG) algorithm
  • count_connected_components for efficiently counting connected components without materializing them
  • connected_components! is now exported and accepts an optional search_queue argument to reduce allocations
  • is_connected optimized to avoid allocating component vectors

v1.13.0 - 2025-06-05

  • (breaking) Julia v1.10 (LTS) minimum version requirement
  • Non-allocating enumerate_paths!

v1.12.0 - 2024-09-29

  • New options for BFSIterator

v1.11.0 - 2024-05-05

  • DFS and BFS iterators
  • Dorogovtsev-Mendes graph generator optimization

v1.10.0 - 2024-04-05

  • Longest path algorithm for DAGs
  • All simple paths algorithm

v1.9.0 - 2023-09-28

  • Rewrite of edit_distance with edge costs
  • Eulerian cycles/trails for undirected graphs
  • mincut implementation
  • strongly_connected_components_tarjan

v1.8.0 - 2023-02-10

  • newman_watts_strogatz graph generator
  • Prufer coding for trees
  • isdigraphical

v1.7.0 - 2022-06-19

  • Hierarchical documentation structure

v1.6.0 - 2022-02-09

  • (breaking) Requires Julia >= v1.6
  • (breaking) Base.zero no longer mandatory for AbstractGraph
  • Simplified AbstractGraph interface

v1.5.0 - 2022-01-09

  • (breaking) merge_vertices now only works on subtypes of AbstractSimpleGraph
  • rich_club function

... (truncated)

Commits
  • e86eac3 version bump for 1.14.0 (#501)
  • 917d31f Documentation page for packages that extend Graphs.jl (#500)
  • 78818a0 Add FrozenVector to wrap neighbors (#317)
  • 2bc509d Add planarity test and PMFG (#208)
  • 89dabeb Count number of connected components more efficiently than `length(connected_...
  • 64eb48b Correction to CI worker settings for macos (#499)
  • b593c8e Fix doctests that depend on Set/Dict iteration order (#493)
  • ef39334 Add CHANGELOG.md and changelog enforcer workflow (#494)
  • 98942df Add regular tree generator (#197)
  • 82fee84 Update CI workflows: replace benchmark with AirspeedVelocity, fix downgrade (...
  • Additional commits viewable in compare view

Updates PythonPlot to 1.0.6

Release notes

Sourced from PythonPlot's releases.

v1.0.6

PythonPlot v1.0.6

Diff since v1.0.5

Merged pull requests:

Closed issues:

  • Default :tk pygui makes julia registry segfault (#42)
  • Segfault when exiting a Julia v1.11.1 session with multiple threads (#45)
  • Loading time is longer than PyPlot (#47)
Commits
  • 746033b Update Project.toml: bump 1.0.6
  • faf6094 Make sure event loop is terminated when Julia exists (#46)
  • 4ad469a Colors.jl 0.13 compat entry (#44)
  • 06136e2 put reading the version from the pyplot package in try catch since it can...
  • 93dfb2e Update README.md: fix backend instructions
  • e7565b9 Update TagBot.yml
  • 9c8379c Update Project.toml: bump 1.0.5
  • c26feef check for matplotlibs.colormaps before matplotlibs.colormaps.register (#40)
  • aff0598 bump 1.0.4
  • 42c6e65 Update deprecated colormap APIs (#38)
  • Additional commits viewable in compare view

Updates StatsBase to 0.34.10

Release notes

Sourced from StatsBase's releases.

v0.34.10

StatsBase v0.34.10

Diff since v0.34.9

Merged pull requests:

Closed issues:

  • sample with UnitWeights and replace=false throws "no field values" error (#950)
  • speed of ecdf (#964)
Commits

Updates ImageIO to 0.6.9

Release notes

Sourced from ImageIO's releases.

v0.6.9

ImageIO v0.6.9

Diff since v0.6.8

Merged pull requests:

Commits

Updates ImageMagick to 1.4.2

Release notes

Sourced from ImageMagick's releases.

v1.4.2

ImageMagick v1.4.2

Diff since v1.4.1

Merged pull requests:

Commits
  • 6599dcf Allow latest ImageMagick_jll (#241)
  • 8980be6 Merge pull request #240 from stecrotti/patch-1
  • b48a2aa Update README.md
  • 2209c2b add test with warnuser=false
  • 7f62d8d Propagate option to raise warning from magickinfo
  • 0ea1363 bump version
  • dee1a33 Revert "Add custom subtypes function to avoid deprecation warnings" (#239)
  • 56a19bb Merge pull request #238 from JuliaIO/dependabot/github_actions/codecov/codeco...
  • 7108632 Update .github/workflows/CI.yml
  • 101bddf Bump codecov/codecov-action from 4 to 5
  • Additional commits viewable in compare view

Updates SimpleWeightedGraphs to 1.5.1

Release notes

Sourced from SimpleWeightedGraphs's releases.

v1.5.1

SimpleWeightedGraphs v1.5.1

Diff since v1.5.0

Merged pull requests:

Commits
  • a51ccb8 Bump to 1.5.1 (#59)
  • 7d45600 Split test deps & move JuliaFormatter to action (#58)
  • a1fb161 MassInstallAction: Install the Downgrade workflow on this repository (#55)
  • 7b0622a Fix typo in performance tip of inneighbors function (#56)
  • 9962e89 Adjust compat bounds and CI Julia versions (episode 2) (#53)
  • 33a69cb Revert "Adjust compat bounds and CI Julia versions" (#52)
  • 045c449 Adjust compat bounds and CI Julia versions (#51)
  • 8128430 get_weight with AbstractEdge (#46)
  • a8da15d Bump version
  • 4d8e451 Create induced subgraph from edge list (#37)
  • Additional commits viewable in compare view

Updates ManifoldDiff to 0.4.5

Release notes

Sourced from ManifoldDiff's releases.

v0.4.5

ManifoldDiff v0.4.5

Diff since v0.4.4

Merged pull requests:

Changelog

Sourced from ManifoldDiff's changelog.

[0.4.5] October 2, 2025

Added

  • Compatibility with ManifoldsBase.jl 2.0 and Manifolds.jl 0.11.

[0.4.4] June 26, 2025

Added

  • Compatibility with ForwardDiff.jl 1.0.

Changed

  • Julia pre tests moved to a separate workflow to allow for failures.

[0.4.3] June 24, 2025

Added

  • Compatibility bounds for FiniteDifferences.jl (0.12), FiniteDiff.jl (2.0), ForwardDiff.jl (0.10), ReverseDiff.jl (1.0), Zygote.jl (0.7), DifferentiationInterface.jl (0.7).

[0.4.2] February 5, 2025

Changed

  • Increased ManifoldsBase.jl compatibility to include 1.0

[0.4.1] December 2, 2024

Added

  • Basic usage example in docs.

[0.4.0] November 27, 2024

Changed

[0.3.13] November 13, 2024

Added

  • jacobian_exp_argument and its mutating variant, jacobian_exp_argument!.
  • jacobian_exp_basepoint and its mutating variant, jacobian_exp_basepoint!.
  • jacobian_log_argument and its mutating variant, jacobian_log_argument!.
  • jacobian_log_basepoint and its mutating variant, jacobian_log_basepoint!.

... (truncated)

Commits
  • 9e4601c Compat with ManifoldsBase.jl 2.0 and Manifolds.jl 0.11 (#81)
  • 7ec0594 Bump actions/checkout from 4 to 5 (#80)
  • 4f80180 Split pre to a new workflow and add ForwardDiff.jl v1 compat (#78)
  • c5d2867 CompatHelper: bump compat for DifferentiationInterface to 0.7 for package doc...
  • ad23cb4 Update compatibility bounds (#74)
  • 7386632 Update CompatHelper.yml
  • acd0cd6 Bump ManifoldsBase to 1.0 (#55)
  • 5dc2f06 Basic usage example (#54)
  • 1715f95 Replace AD package extensions with DifferentiationInterface (#51)
  • cbee92a Adapt to Julia 1.11 (#50)
  • Additional commits viewable in compare view

Updates Manifolds to 0.11.23

Release notes

Sourced from Manifolds's releases.

v0.11.23

Manifolds v0.11.23

Diff since v0.11.22

Changed

  • Bumped RecursiveArrayTools compat to 2, 3, 4 and OrdinaryDiffEq compat to 6.31, 7, allowing the SciMLBase 3 ecosystem (RAT 4 / OrdinaryDiffEqCore 4 / SciMLBase 3).
  • ManifoldsOrdinaryDiffEqDiffEqCallbacksExt now uses Rodas5P instead of the removed Rodas5 re-export from OrdinaryDiffEq, and SciMLBase.terminate! instead of the removed OrdinaryDiffEq.terminate!. The default solver for solve_chart_exp_ode / solve_chart_parallel_transport_ode is now AutoVern9(Rodas5P()).

Fixed

  • ManifoldsBoundaryValueDiffEqExt now triggers on BoundaryValueDiffEqMIRK (the only subpackage actually used) and requires version 1.17, avoiding a transitive resolver picking BoundaryValueDiffEqCore 2.1 with BoundaryValueDiffEqMIRK / BoundaryValueDiffEqFIRKSciML/DifferentialEquations.jl#11361.17 lower bound also includes the upstream fix for SciML/BoundaryValueDiffEq.jl#484 (UndefRefError in MIRK adaptive mesh refinement on nonlinear BVPs under the SciMLBase 3 / RAT 4 stack), so solve_chart_log_bvp works with default adaptive = true.
  • solve_chart_log_bvp now uses a function-valued initial guess (linear interpolation between a1 and a2) and the callable bc!(residual, u, p, t) API (u(tspan[1]), u(tspan[2])) compatible with EvalSol. kwargs... are now forwarded to solve (previously silently dropped), so callers can pass through adaptive and other solver options.
Changelog

Sourced from Manifolds's changelog.

[0.11.23] 2026-04-29

Changed

  • Bumped RecursiveArrayTools compat to 2, 3, 4 and OrdinaryDiffEq compat to 6.31, 7, allowing the SciMLBase 3 ecosystem (RAT 4 / OrdinaryDiffEqCore 4 / SciMLBase 3).
  • ManifoldsOrdinaryDiffEqDiffEqCallbacksExt now uses Rodas5P instead of the removed Rodas5 re-export from OrdinaryDiffEq, and SciMLBase.terminate! instead of the removed OrdinaryDiffEq.terminate!. The default solver for solve_chart_exp_ode / solve_chart_parallel_transport_ode is now AutoVern9(Rodas5P()).

Fixed

  • ManifoldsBoundaryValueDiffEqExt now triggers on BoundaryValueDiffEqMIRK (the only subpackage actually used) and requires version 1.17, avoiding a transitive resolver picking BoundaryValueDiffEqCore 2.1 with BoundaryValueDiffEqMIRK / BoundaryValueDiffEqFIRKSciML/DifferentialEquations.jl#11361.17 lower bound also includes the upstream fix for SciML/BoundaryValueDiffEq.jl#484 (UndefRefError in MIRK adaptive mesh refinement on nonlinear BVPs under the SciMLBase 3 / RAT 4 stack), so solve_chart_log_bvp works with default adaptive = true.
  • solve_chart_log_bvp now uses a function-valued initial guess (linear interpolation between a1 and a2) and the callable bc!(residual, u, p, t) API (u(tspan[1]), u(tspan[2])) compatible with EvalSol. kwargs... are now forwarded to solve (previously silently dropped), so callers can pass through adaptive and other solver options.

[0.11.22] 2026-04-24

Added

Changed

  • Improved performance of embed for embedding tangent vectors of the FixedRankMaticesManifold (#885).

[0.11.21] 2025-04-03

Changed

  • bump compat of RecursiveArrayTools to 4
  • introduce a Project.toml workspace and a separate Project.toml for the test/ folder
  • move julia package dependency checks from CompatHelper to dependabot, since that one can group PRs.

[0.11.20] 2026-03-31

Added

Changed

  • Improved formatting of the references in the Readme.md (#869)

Fixed

  • get_vectors on Stiefel no longer returns incorrect vectors in certain cases.

[0.11.19] 2026-03-21

Added

  • recursive_bottom_eltype methods for TuckerTangentVector and TuckerPoint for better compatibility with RecursiveArrayTools.jl.

... (truncated)

Commits
  • b89d4f8 Re-enable adaptive in embedded_torus BVP test (BVP MIRK 1.17) (#891)
  • ae605eb Fix ManifoldsBoundaryValueDiffEqExt resolver / precompile failure (#887)
  • 16a6970 Bump crate-ci/typos from 1.45.1 to 1.46.0 (#888)
  • 22b90b7 Improve performance of embed for FixedRankMatrices (fixes #884) (#885)
  • 0821225 Add a paragraph to the contributing.md about using AI within this repository....
  • 956a872 Bump julia-actions/setup-julia from 2 to 3 (#883)
  • 3ba936a Bump crate-ci/typos from 1.45.0 to 1.45.1 (#882)
  • 0dd163c Bump crate-ci/typos from 1.44.0 to 1.45.0 (#879)
  • 1bda31e Introduce Workspace for the Project.toml (#878)
  • ddea89c 🦺 Moving to the new Test suite (refactoring tests, Chapter MCCXXVIII) (#847)
  • Additional commits viewable in compare view

Updates StaticArrays to 1.9.18

Release notes

Sourced from StaticArrays's releases.

v1.9.18

StaticArrays v1.9.18

Diff since v1.9.17

Merged pull requests:

Commits

Updates QuartzImageIO to 0.7.5

Release notes

Sourced from QuartzImageIO's releases.

v0.7.5

QuartzImageIO v0.7.5

@dependabot dependabot Bot added dependencies Pull requests that update a dependency file julia Pull requests that update julia code labels May 1, 2026
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dependabot Bot force-pushed the dependabot/julia/test/all-julia-packages-f0d077e0d8 branch from 6084b58 to 14ee4d9 Compare May 2, 2026 13:06
@kellertuer kellertuer closed this May 5, 2026
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@kellertuer kellertuer reopened this May 5, 2026
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Retrigger CI (I hope dependabot is not too confused by that?)

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@dependabot
Bump the all-julia-packages group across 1 directory with 14 updates
759eaa3 
Updates the requirements on [Statistics](https://github.com/JuliaStats/Statistics.jl), [Tullio](https://github.com/mcabbott/Tullio.jl), [ForwardDiff](https://github.com/JuliaDiff/ForwardDiff.jl), [FiniteDifferences](https://github.com/JuliaDiff/FiniteDifferences.jl), [Graphs](https://github.com/JuliaGraphs/Graphs.jl), [PythonPlot](https://github.com/JuliaPy/PythonPlot.jl), [StatsBase](https://github.com/JuliaStats/StatsBase.jl), [ImageIO](https://github.com/JuliaIO/ImageIO.jl), [ImageMagick](https://github.com/JuliaIO/ImageMagick.jl), [SimpleWeightedGraphs](https://github.com/JuliaGraphs/SimpleWeightedGraphs.jl), [ManifoldDiff](https://github.com/JuliaManifolds/ManifoldDiff.jl), [Manifolds](https://github.com/JuliaManifolds/Manifolds.jl), [StaticArrays](https://github.com/JuliaArrays/StaticArrays.jl) and [QuartzImageIO](https://github.com/JuliaIO/QuartzImageIO.jl) to permit the latest version.

Updates `Statistics` to 1.11.1
- [Release notes](https://github.com/JuliaStats/Statistics.jl/releases)
- [Commits](JuliaStats/Statistics.jl@v1.4.0...v1.11.1)

Updates `Tullio` to 0.3.9
- [Release notes](https://github.com/mcabbott/Tullio.jl/releases)
- [Commits](mcabbott/Tullio.jl@v0.1.0...v0.3.9)

Updates `ForwardDiff` to 1.3.3
- [Release notes](https://github.com/JuliaDiff/ForwardDiff.jl/releases)
- [Commits](JuliaDiff/ForwardDiff.jl@v0.0.2...v1.3.3)

Updates `FiniteDifferences` to 0.12.33
- [Release notes](https://github.com/JuliaDiff/FiniteDifferences.jl/releases)
- [Commits](JuliaDiff/FiniteDifferences.jl@v0.1.0...v0.12.33)

Updates `Graphs` to 1.14.0
- [Release notes](https://github.com/JuliaGraphs/Graphs.jl/releases)
- [Changelog](https://github.com/JuliaGraphs/Graphs.jl/blob/master/CHANGELOG.md)
- [Commits](JuliaGraphs/Graphs.jl@v0.10.0...v1.14.0)

Updates `PythonPlot` to 1.0.6
- [Release notes](https://github.com/JuliaPy/PythonPlot.jl/releases)
- [Commits](JuliaPy/PythonPlot.jl@v1.0.0...v1.0.6)

Updates `StatsBase` to 0.34.10
- [Release notes](https://github.com/JuliaStats/StatsBase.jl/releases)
- [Commits](JuliaStats/StatsBase.jl@0.2.3...v0.34.10)

Updates `ImageIO` to 0.6.9
- [Release notes](https://github.com/JuliaIO/ImageIO.jl/releases)
- [Commits](JuliaIO/ImageIO.jl@v0.0.1...v0.6.9)

Updates `ImageMagick` to 1.4.2
- [Release notes](https://github.com/JuliaIO/ImageMagick.jl/releases)
- [Changelog](https://github.com/JuliaIO/ImageMagick.jl/blob/master/NEWS.md)
- [Commits](JuliaIO/ImageMagick.jl@v0.0.1...v1.4.2)

Updates `SimpleWeightedGraphs` to 1.5.1
- [Release notes](https://github.com/JuliaGraphs/SimpleWeightedGraphs.jl/releases)
- [Commits](JuliaGraphs/SimpleWeightedGraphs.jl@v1.2.2...v1.5.1)

Updates `ManifoldDiff` to 0.4.5
- [Release notes](https://github.com/JuliaManifolds/ManifoldDiff.jl/releases)
- [Changelog](https://github.com/JuliaManifolds/ManifoldDiff.jl/blob/main/Changelog.md)
- [Commits](JuliaManifolds/ManifoldDiff.jl@v0.1.0...v0.4.5)

Updates `Manifolds` to 0.11.23
- [Release notes](https://github.com/JuliaManifolds/Manifolds.jl/releases)
- [Changelog](https://github.com/JuliaManifolds/Manifolds.jl/blob/master/NEWS.md)
- [Commits](v0.1.0...v0.11.23)

Updates `StaticArrays` to 1.9.18
- [Release notes](https://github.com/JuliaArrays/StaticArrays.jl/releases)
- [Commits](JuliaArrays/StaticArrays.jl@v0.0.1...v1.9.18)

Updates `QuartzImageIO` to 0.7.5
- [Release notes](https://github.com/JuliaIO/QuartzImageIO.jl/releases)
- [Commits](JuliaIO/QuartzImageIO.jl@v0.0.2...v0.7.5)

---
updated-dependencies:
- dependency-name: FiniteDifferences
  dependency-version: 0.12.33
  dependency-type: direct:production
  dependency-group: all-julia-packages
- dependency-name: ForwardDiff
  dependency-version: 1.3.3
  dependency-type: direct:production
  dependency-group: all-julia-packages
- dependency-name: Graphs
  dependency-version: 1.14.0
  dependency-type: direct:production
  dependency-group: all-julia-packages
- dependency-name: ImageIO
  dependency-version: 0.6.9
  dependency-type: direct:production
  dependency-group: all-julia-packages
- dependency-name: ImageMagick
  dependency-version: 1.4.2
  dependency-type: direct:production
  dependency-group: all-julia-packages
- dependency-name: ManifoldDiff
  dependency-version: 0.4.5
  dependency-type: direct:production
  dependency-group: all-julia-packages
- dependency-name: Manifolds
  dependency-version: 0.11.22
  dependency-type: direct:production
  dependency-group: all-julia-packages
- dependency-name: PythonPlot
  dependency-version: 1.0.6
  dependency-type: direct:production
  dependency-group: all-julia-packages
- dependency-name: QuartzImageIO
  dependency-version: 0.7.5
  dependency-type: direct:production
  dependency-group: all-julia-packages
- dependency-name: SimpleWeightedGraphs
  dependency-version: 1.5.1
  dependency-type: direct:production
  dependency-group: all-julia-packages
- dependency-name: StaticArrays
  dependency-version: 1.9.18
  dependency-type: direct:production
  dependency-group: all-julia-packages
- dependency-name: Statistics
  dependency-version: 1.11.1
  dependency-type: direct:production
  dependency-group: all-julia-packages
- dependency-name: StatsBase
  dependency-version: 0.34.10
  dependency-type: direct:production
  dependency-group: all-julia-packages
- dependency-name: Tullio
  dependency-version: 0.3.9
  dependency-type: direct:production
  dependency-group: all-julia-packages
...

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dependabot Bot force-pushed the dependabot/julia/test/all-julia-packages-f0d077e0d8 branch from 24758a3 to 759eaa3 Compare May 5, 2026 08:07
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✅ All modified and coverable lines are covered by tests.
✅ Project coverage is 100.00%. Comparing base (b89d4f8) to head (683f921).

Additional details and impacted files 
@@            Coverage Diff            @@
##            master      #890   +/-   ##
=========================================
  Coverage   100.00%   100.00%           
=========================================
  Files           98        98           
  Lines         9749      9749           
=========================================
  Hits          9749      9749

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kellertuer merged commit 9c7a89a into master May 5, 2026
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dependabot Bot deleted the dependabot/julia/test/all-julia-packages-f0d077e0d8 branch May 5, 2026 09:36
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