mpifileutils: New package

M/mpifileutils/build_tarballs.jl

@@ -0,0 +1,112 @@
+# Note that this script can accept some limited command-line arguments,
+# run `julia build_tarballs.jl --help` to see a usage message.
+using BinaryBuilder, Pkg
+using Base.BinaryPlatforms
+const YGGDRASIL_DIR = "../.."
+include(joinpath(YGGDRASIL_DIR, "platforms", "mpi.jl"))
+
+name = "mpifileutils"
+version = v"0.12.0"
+
+# Collection of sources required to complete build
+sources = [
+    GitSource("https://github.com/hpc/mpifileutils", "db315cf72cb52fb48b688fcef9fbeac1121f6ee4"),
+    DirectorySource("bundled"),
+]
+
+# Bash recipe for building across all platforms
+script = raw"""
+cd ${WORKSPACE}/srcdir/mpifileutils
+
+atomic_patch -p1 ../patches/mpi.patch
+
+xattrs=ON
+if [[ $target = *apple* || $target = *freebsd* ]]; then
+   # libattr is not available
+   xattrs=OFF
+fi
+
+cmake_options=(
+    -Bbuild
+    -DCMAKE_BUILD_TYPE=Release
+    -DCMAKE_FIND_ROOT_PATH=${prefix}
+    -DCMAKE_INSTALL_PREFIX=${prefix}
+    -DCMAKE_PREFIX_PATH=${prefix}
+    -DCMAKE_TOOLCHAIN_FILE=${CMAKE_TARGET_TOOLCHAIN}
+    -DMPI_HOME=${prefix}
+    -DENABLE_DAOS=OFF
+    -DENABLE_EXPERIMENTAL=OFF
+    -DENABLE_GPFS=OFF
+    -DENABLE_HDF5=OFF           # requires HDF5
+    -DENABLE_HPFS=OFF
+    -DENABLE_LIBARCHIVE=ON
+    -DENABLE_XATTRS=${xattrs}   # requires libattr
+)
+export MPITRAMPOLINE_CC="${CC}"
+export MPITRAMPOLINE_CXX="${CXX}"
+export MPITRAMPOLINE_FC="${FC}"
+
+cmake "${cmake_options[@]}"
+cmake --build build --parallel ${nproc}
+cmake --install build
+"""
+
+augment_platform_block = """
+    using Base.BinaryPlatforms
+    $(MPI.augment)
+    augment_platform!(platform::Platform) = augment_mpi!(platform)
+"""
+
+# These are the platforms we will build for by default, unless further
+# platforms are passed in on the command line
+platforms = supported_platforms()
+
+platforms, platform_dependencies = MPI.augment_platforms(platforms)
+
+# <byteswap.h> is required
+filter!(!Sys.isapple, platforms)
+# <sys/sysinfo.h> is required
+filter!(!Sys.isfreebsd, platforms)
+# MPI isn't working well on Windows
+filter!(!Sys.iswindows, platforms)
+
+# The products that we will ensure are always built
+products = [
+    LibraryProduct("libmfu", :libmfu),
+    ExecutableProduct("dbcast", :dbcast),
+    ExecutableProduct("dbz2", :dbz2),
+    ExecutableProduct("dchmod", :dchmod),
+    ExecutableProduct("dcmp", :dcmp),
+    ExecutableProduct("dcp", :dcp),
+    ExecutableProduct("dcp1", :dcp1),
+    ExecutableProduct("ddup", :ddup),
+    ExecutableProduct("dfilemaker", :dfilemaker),
+    ExecutableProduct("dfind", :dfind),
+    ExecutableProduct("dreln", :dreln),
+    ExecutableProduct("drm", :drm),
+    ExecutableProduct("dstripe", :dstripe),
+    ExecutableProduct("dsync", :dsync),
+    ExecutableProduct("dtar", :dtar),
+]
+
+# Dependencies that must be installed before this package can be built
+dependencies = [
+    #TODO # To ensure that the correct version of libgfortran is found at runtime
+    #TODO Dependency(PackageSpec(name="CompilerSupportLibraries_jll", uuid="e66e0078-7015-5450-92f7-15fbd957f2ae")),
+    Dependency("Attr_jll"; compat="2.5.3"),
+    Dependency("Bzip2_jll"; compat="1.0.9"),
+    Dependency("LibArchive_jll"; compat="3.7.9"),
+    Dependency("OpenSSL_jll"; compat="3.0.16"),
+    Dependency("dtcmp_jll"; compat="1.1.6"),
+    Dependency("libcap_jll"; compat="2.76"),
+    Dependency("libcircle_jll"; compat="0.3"),
+]
+append!(dependencies, platform_dependencies)
+
+# Don't look for `mpiwrapper.so` when BinaryBuilder examines and `dlopen`s the shared libraries.
+# (MPItrampoline will skip its automatic initialization.)
+ENV["MPITRAMPOLINE_DELAY_INIT"] = "1"
+
+# Build the tarballs, and possibly a `build.jl` as well.
+build_tarballs(ARGS, name, version, sources, script, platforms, products, dependencies;
+               augment_platform_block, julia_compat="1.6", preferred_gcc_version=v"5")

M/mpifileutils/bundled/patches/mpi.patch

@@ -0,0 +1,14 @@
+diff --git a/src/dbcast/dbcast.c b/src/dbcast/dbcast.c
+index 52d0553..38a8f2a 100644
+--- a/src/dbcast/dbcast.c
++++ b/src/dbcast/dbcast.c
+@@ -34,7 +34,8 @@
+
+ #define GCS_SUCCESS (0)
+
+-static int gcs_shm_file_key = MPI_KEYVAL_INVALID;
++static int gcs_shm_file_key;
++__attribute__((__constructor__)) static void init_gcs_shm_file_key() { gcs_shm_file_key = MPI_KEYVAL_INVALID; }
+
+ static strmap* gcs_shm_ptr_tree = NULL;
+