v0.7.0

SMLMData v0.7.0

Diff since v0.6.0

Breaking changes

There are no breaking changes. This is a minor version bump (v0.6.0 -> v0.7.0) that adds two new exported abstract types (AbstractSMLMConfig, AbstractSMLMInfo) for the JuliaSMLM ecosystem tuple pattern. No existing API is modified or removed.

Merged pull requests:

• Add AbstractSMLMConfig and AbstractSMLMInfo types (#36) (@kalidke)

v0.6.0

SMLMData v0.6.0

Diff since v0.5.1

Breaking changes

• Emitter2DFit: New σ_xy field added between σ_y and σ_photons for x-y covariance
• Emitter3DFit: New σ_xy, σ_xz, σ_yz fields added for full 3D covariance matrix

Migration

Use the keyword constructor which remains backward compatible:

Emitter2DFit{T}(x, y, photons, bg, σ_x, σ_y, σ_photons, σ_bg; σ_xy=0.0, frame=1, ...)
Emitter3DFit{T}(x, y, z, photons, bg, σ_x, σ_y, σ_z, σ_photons, σ_bg; σ_xy=0.0, σ_xz=0.0, σ_yz=0.0, ...)

All JuliaSMLM ecosystem packages tested and compatible.

Merged pull requests:

• Add covariance fields to Emitter2DFit and Emitter3DFit (v0.6.0) (#35) (@kalidke)

v0.5.1

SMLMData v0.5.1

Diff since v0.5.0

Merged pull requests:

• Fix SCMOSCamera matrix convention to match Julia standard (#34) (@kalidke)

v0.5.0

SMLMData v0.5.0

Diff since v0.4.0

Breaking changes

• Remove SCMOSCamera accessor functions (get_offset, get_gain, get_readnoise, get_qe, get_readnoise_var) - access struct fields directly instead

New features

• Add ROIBatch{T,N,A,C} type for batched ROI processing across JuliaSMLM ecosystem
• Add SingleROI{T} type for individual ROI with location context
• GPU support via Adapt.jl for ROIBatch
• Iteration and indexing support for ROIBatch

Documentation

• Add "Ecosystem Role" section explaining SMLMData as core types package
• Clarify that other JuliaSMLM packages re-export SMLMData types

Merged pull requests:

• Add ROIBatch types and documentation improvements (v0.5.0) (#33) (@kalidke)

v0.4.0 - sCMOS Camera Support

Added

• SCMOSCamera type for sCMOS camera support with pixel-dependent calibration parameters
  • offset: Dark level in ADU (scalar or per-pixel matrix)
  • gain: Conversion gain in e⁻/ADU (scalar or per-pixel matrix)
  • readnoise: Read noise in e⁻ rms (scalar or per-pixel matrix)
  • qe: Quantum efficiency 0-1 (scalar or per-pixel matrix)
  • Units match camera specification sheets for easy parameterization
  • Supports mixed scalar and matrix parameters for flexible calibration
  • Two constructor forms: (nx, ny, pixel_size, readnoise; kwargs...) and (edges_x, edges_y; kwargs...)
• Accessor functions for SCMOSCamera parameters: get_offset, get_gain, get_readnoise, get_qe, get_readnoise_var
• Custom display methods showing parameter types (uniform vs per-pixel)
• Comprehensive test suite with 91 new tests covering:
  • Scalar and matrix parameter construction
  • Type stability (Float32/Float64)
  • Dimension validation
  • Accessor functions
  • Realistic use cases (ORCA-Flash4.0, ORCA-Quest specifications)

Changed

• Updated type hierarchy documentation to include SCMOSCamera
• Enhanced README.md with SCMOSCamera examples
• Expanded api_overview.md with detailed SCMOSCamera usage patterns
• Version bumped to 0.4.0 (minor version for backward-compatible new feature)

Notes

• No breaking changes - purely additive feature
• IdealCamera remains the default for Poisson-only noise models
• SCMOSCamera designed for compatibility with future SMLMCamera.jl calibration package

---

Full Changelog: v0.3.1...v0.4.0

v0.3.1

SMLMData v0.3.1

Diff since v0.3.0

Documentation improvements

• Add api() function that integrates API documentation into Julia's help system
• Users can now access comprehensive API docs via ?SMLMData.api or SMLMData.api()
• Update module docstring to reference new documentation feature
• Add .claude directory with development command configurations

Merged pull requests:

• Integrate API documentation into package help system (#30) (@kalidke)
• Fix version to 0.3.1 for documentation updates (#31) (@kalidke)

v0.3.0

SMLMData v0.3.0

Diff since v0.2.3

Breaking changes

• Fix frame numbering to be 1-based throughout package (breaking change from 0-based indexing)
• Update emitter constructors default frame values from 0 to 1
• Existing code using frame numbers will need to be updated to account for 1-based indexing

Other changes

• Update tests and documentation to reflect 1-based frame numbering
• Add CLAUDE.md for development guidance

Merged pull requests:

• Fix frame numbering to be 1-based throughout package (#29) (@kalidke)

v0.2.3

SMLMData v0.2.3

Diff since v0.2.2

minor updates

• handle complex values from smite when loading
• improve Base.show() methods

Merged pull requests:

• Handle complex smite value on loading. (#28) (@kalidke)

v0.2.2

SMLMData v0.2.2

Diff since v0.2.1

v0.2.1

SMLMData v0.2.1

Diff since v0.2.0

Merged pull requests:

• Docs update (#27) (@kalidke)