Feature/use conda by yinshiyi · Pull Request #116 · KChen-lab/Monopogen

yinshiyi · 2025-05-21T18:27:48Z

add error reporting, when component of script fail, it has the correct exit code for potential nextflow integration
use conda environment to fix versions of dependencies
improve test script portability and remove hardcoded path

update error reporting function

yinshiyi added 11 commits May 21, 2025 11:24

add conda environment file

3c342d6

improve test script portability

47a611a

remove hard coded path

c92a2e8

add error reporting, remove binary link

1bbafff

fix dependency check

9fc3bbd

fix Germline test file

6ec3766

update conda yaml

962e2a9

update cmd to bcftools

7878694

update error reporting function

remove link to custom binary

ca42fda

add back the preprocess cmd

b190b3d

improve protablity of test script

7953073

yinshiyi marked this pull request as ready for review January 29, 2026 21:45

Provide feedback