Fix #510 #515
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Fix #510 #515
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Regenerate registry/taxon_mapping.yaml using --include-all-taxa flag to ensure all taxon IDs used in resource files are properly mapped. This fixes the issue where many NCBI Taxon IDs (especially plant species in Plant Reactome) were not being displayed with their scientific names on Resource pages. Previously, the mapping was limited to a hardcoded set of common model organisms. Now it includes all unique taxa found in the registry, enabling proper display of taxon names for all resources. Fixes issue #510: Some taxids are not mapped to names on Resource pages #510 🤖 Generated with Claude Code Co-Authored-By: Claude Sonnet 4.5 <[email protected]>
Add registry/taxon_mapping.yaml to the list of files committed by the update-registry GitHub Actions workflow. This ensures that changes to the taxon mapping file (which is regenerated with 'make all' when resource metadata changes) are properly committed and pushed to the repository. Previously, the taxon mapping was regenerated but not committed, causing the regenerated file to be lost and replaced with the stale version on the next workflow run. This complements the Makefile configuration that already rebuilds the taxon mapping with --include-all-taxa flag to ensure all organism taxa are properly mapped and displayed on resource pages. Relates to issue #510: Some taxids are not mapped to names on Resource pages 🤖 Generated with Claude Code Co-Authored-By: Claude Sonnet 4.5 <[email protected]>
caufieldjh
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