Skip to content

implementing low-memory prefetch for one-vs-many comparisons (resolves #27) #32

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Merged
merged 11 commits into from
Dec 18, 2024

Conversation

mahmudhera
Copy link
Member

  • remove stale files
  • use proper threading in index load (previously it was using as many threads as there are chunk files in the stored index)
  • modularize extraction of index
  • modularize index info read (reading the summary file)
  • implement single threaded prefetch
  • add python test to ensure sourmash prefect produces the same results
  • add sourmash prefetch outputs in repo
  • add tests against the outputs in ci.yml

@mahmudhera mahmudhera merged commit dd5559c into KoslickiLab:main Dec 18, 2024
1 check passed
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

1 participant