0.3.0

Description

🎉 Here is our new TomoBEAR-0.3.0 release 🎉

🔖 Click to compare code changes with previous version v0.2.0

🚀 New Features

• local_live data processing mode - new mode allows to make on-the-fly pre-processing and reconstructions during data collection to check the sample quality. Currently only single-shot collected data is supported for this feature.
• EER (Electron Event Representation) support: input files format perception along with .gain gain file format support are now enabled in MotionCor2 module
• GenerateParticles - new module which allows to generate particles using either Dynamo (by cropping) or SUSAN (by subtomogram reconstructions)
• IsoNet - module wrapping IsoNet - CNN for denoising and missing wedge reconstruction

⬆️ Improvements

• BinStacks: added possibility to bin non-aligned stacks
• AreTomo:
  • enabled binned stack input
  • enabled local patch-based alignment
• BatchRunTomo: enabled IMOD-based patch-tracking
• Reconstruct: enabled nonlinear anisotropic diffusion (NAD) filter for tomograms post-filtering
• GCTFCtfphaseflipCTFCorrection: added possibility to use CTFFIND4

🐛 Major fixes

• input files perception - fixed duplicated file extension ( issue #16 )

📝 Important documentation updates

• updated installation instructions
• added section describing available input file formats
• added video-tutorials on TomoBEAR installation, setup and usage