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Drops SCR_Start_checkpoint and SCR_Complete_checkpoint.

Adds an output flag to complete functions to return status to caller rather than using the return code.

SCR_Complete_restart(int valid, int* allvalid)
SCR_Complete_output(int valid, int* allvalid)

Update examples to better illustrate purpose of valid flag.

@adammoody adammoody added the WIP label Jun 6, 2020
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