Feautre/adapt opt #565
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Feautre/adapt opt #565
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Add acknowledgements to README and online docs landing page
Add new warnings flags for gcc and clang. --------- Co-authored-by: David Gardner <[email protected]>
Add operator splitting stepper module to ARKODE ----- Co-authored-by: David Gardner <[email protected]> Co-authored-by: Daniel R. Reynolds <[email protected]> Co-authored-by: Cody Balos <[email protected]> Co-authored-by: Balos, Cody, J <[email protected]>
Fix out of bounds read when setting MRI stage type
* Fix memory leak when attaching an H-Tol controller to MRIStep * Fix memory leak / out of bound array access in Lagrange interpolation module * Fix memory leaks in unit tests
Fix a bug in SPRKStep where `yerr` was not initialized to zero when using compensated summations
Add missing 32-bit ``sunindextype`` Fortran interface functions for * ``N_VGetSubvectorArrayPointer_ManyVector`` * ``N_VGetSubvectorArrayPointer_MPIManyVector`` * ``SUNBandMatrix_Column`` * ``SUNDenseMatrix_Column``
Fix a bug when enabling rootfinding with fixed step sizes and the initial value of the rootfinding function is zero. In this case, uninitialized right-hand side data (`fn`) is used to compute a forward Euler step to get a state near the initial condition to determine if any rootfinding functions are active at the initial condition.
Fix dissipated entropy example: * Vector and matrix size * Initial condition * Answer function --------- Co-authored-by: Cody Balos <[email protected]>
Add test without TPLs to run CI with the address sanitizer enabled --------- Co-authored-by: Cody Balos <[email protected]>
Update set function name to be consistent with `SetNum` naming convention
Fix SYCL vector build with 2025 oneAPI compilers. Fix for #596 --------- Co-authored-by: David Gardner <[email protected]>
Follow on to utilities added in #499 * Make info logging output in the integrators more consistent * Update parser for MRI and operator splitting methods * Add function to extract lists of data for plotting * Add example scripts using log parser --------- Co-authored-by: Steven Roberts <[email protected]> Co-authored-by: Daniel R. Reynolds <[email protected]> Co-authored-by: Cody Balos <[email protected]>
SUNDIALS Release v7.2.0
Updates to start the next release cycle on develop
Move vector, matrix, linear solver, and nonlinear solver tests to unit test directory ----- Co-authored-by: David Gardner <[email protected]>
Create separate sections for documenting source code and documentation in the developer guide
Remove mostly unused force_variable CMake macro
Remove wrappers that were originally part of a C90 workaround and are no longer needed now that C99 is required
Fix a bug in ARKStep where an extra right-hand side evaluation occurs each time step when enabling the ``ARKodeSetAutonomous`` option and using an IMEX method where the DIRK table has an implicit first and is not stiffly accurate. Fix a bug in counting the number of explicit RHS evaluations in the ARKStep Dahlquist unit test. --------- Co-authored-by: Daniel R. Reynolds <[email protected]>
* Always enable testing * Consistent naming of CMake testing options * Add warnings/errors for some testing option combinations * Add documentation for testing options * Move testing README into testing docs * Cleanup using default testing options * Enable running test in containers without enabling development tests * Simplify setting pre and post executable run commands/options in sundials_add_test * Remove redundant Jenkins tests * Remove precision dependent diff option in unit tests
SUNDIALS Release v7.2.1 --------- Co-authored-by: Cody Balos <[email protected]> Co-authored-by: Daniel R. Reynolds <[email protected]>
Update recent changes for next release cycle
Update release checklist ----- Co-authored-by: David Gardner <[email protected]>
Adding a status badge for the workflow that tracks downloads in https://github.com/sundials-codes/sundials-download-tracker. This will make it readily apparent when there is an issue tracking downloads. See sundials-codes/sundials-download-tracker#1.
Fix version numbers in the install guide Fix scripts to automatically update version numbers Fix typo in version changed directive
Only zero yerr when compensated summation is enabled ----- Co-authored-by: David J. Gardner <[email protected]>
Bumps [docker/build-push-action](https://github.com/docker/build-push-action) from 6.10.0 to 6.11.0. <details> <summary>Release notes</summary> <p><em>Sourced from <a href="https://github.com/docker/build-push-action/releases">docker/build-push-action's releases</a>.</em></p> <blockquote> <h2>v6.11.0</h2> <ul> <li>Handlebar <code>defaultContext</code> support for <code>build-contexts</code> input by <a href="https://github.com/crazy-max"><code>@crazy-max</code></a> in <a href="https://redirect.github.com/docker/build-push-action/pull/1283">docker/build-push-action#1283</a></li> <li>Bump <code>@docker/actions-toolkit</code> from 0.46.0 to 0.49.0 in <a href="https://redirect.github.com/docker/build-push-action/pull/1281">docker/build-push-action#1281</a></li> </ul> <p><strong>Full Changelog</strong>: <a href="https://github.com/docker/build-push-action/compare/v6.10.0...v6.11.0">https://github.com/docker/build-push-action/compare/v6.10.0...v6.11.0</a></p> </blockquote> </details> <details> <summary>Commits</summary> <ul> <li><a href="https://github.com/docker/build-push-action/commit/b32b51a8eda65d6793cd0494a773d4f6bcef32dc"><code>b32b51a</code></a> Merge pull request <a href="https://redirect.github.com/docker/build-push-action/issues/1281">#1281</a> from docker/dependabot/npm_and_yarn/docker/actions-t...</li> <li><a href="https://github.com/docker/build-push-action/commit/594bf46f0f6d32fd8bd98a553127950004165c96"><code>594bf46</code></a> Merge pull request <a href="https://redirect.github.com/docker/build-push-action/issues/1294">#1294</a> from crazy-max/fix-e2e</li> <li><a href="https://github.com/docker/build-push-action/commit/fd37bd55af0b8c458ea0ff376ce151a332fa7aed"><code>fd37bd5</code></a> ci(e2e): fix setup docker config</li> <li><a href="https://github.com/docker/build-push-action/commit/e6478a2405f3527f33b93efb6857519c3ffd91f2"><code>e6478a2</code></a> chore: update generated content</li> <li><a href="https://github.com/docker/build-push-action/commit/78785bddff35ca36f384e0c6a8a367584317df9f"><code>78785bd</code></a> chore(deps): Bump <code>@docker/actions-toolkit</code> from 0.46.0 to 0.49.0</li> <li><a href="https://github.com/docker/build-push-action/commit/128779fed7edb034b3f8006e9dac81a8593c040e"><code>128779f</code></a> Merge pull request <a href="https://redirect.github.com/docker/build-push-action/issues/1283">#1283</a> from crazy-max/named-context-handlebars</li> <li><a href="https://github.com/docker/build-push-action/commit/7e094594beda23fc8f21fa31049f4b203e51096b"><code>7e09459</code></a> Merge pull request <a href="https://redirect.github.com/docker/build-push-action/issues/1282">#1282</a> from crazy-max/remove-buildkit-5561</li> <li><a href="https://github.com/docker/build-push-action/commit/32ee877a58507615d974839965ef8e530d66362e"><code>32ee877</code></a> Revert "init buildkit-5561 workflow"</li> <li><a href="https://github.com/docker/build-push-action/commit/d1a4129c41bb3f92b731b33dc29cfe5f6cd9298f"><code>d1a4129</code></a> chore: update generated content</li> <li><a href="https://github.com/docker/build-push-action/commit/49c623eaf82513814393adabc13bf2535384d735"><code>49c623e</code></a> handlebar defaultContext support for build-contexts input</li> <li>Additional commits viewable in <a href="https://github.com/docker/build-push-action/compare/v6.10.0...v6.11.0">compare view</a></li> </ul> </details> <br /> [](https://docs.github.com/en/github/managing-security-vulnerabilities/about-dependabot-security-updates#about-compatibility-scores) Dependabot will resolve any conflicts with this PR as long as you don't alter it yourself. You can also trigger a rebase manually by commenting `@dependabot rebase`. [//]: # (dependabot-automerge-start) [//]: # (dependabot-automerge-end) --- <details> <summary>Dependabot commands and options</summary> <br /> You can trigger Dependabot actions by commenting on this PR: - `@dependabot rebase` will rebase this PR - `@dependabot recreate` will recreate this PR, overwriting any edits that have been made to it - `@dependabot merge` will merge this PR after your CI passes on it - `@dependabot squash and merge` will squash and merge this PR after your CI passes on it - `@dependabot cancel merge` will cancel a previously requested merge and block automerging - `@dependabot reopen` will reopen this PR if it is closed - `@dependabot close` will close this PR and stop Dependabot recreating it. You can achieve the same result by closing it manually - `@dependabot show <dependency name> ignore conditions` will show all of the ignore conditions of the specified dependency - `@dependabot ignore this major version` will close this PR and stop Dependabot creating any more for this major version (unless you reopen the PR or upgrade to it yourself) - `@dependabot ignore this minor version` will close this PR and stop Dependabot creating any more for this minor version (unless you reopen the PR or upgrade to it yourself) - `@dependabot ignore this dependency` will close this PR and stop Dependabot creating any more for this dependency (unless you reopen the PR or upgrade to it yourself) </details> Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
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Draft status while doing performance comparisons.
This branches of off
feature/rk_defaultswithfeature/min-errmerged in.Current adaptivity controller changes: