NWB converter

Ongoing work to convert neurophysology data to the NWB data format.

Dictionary of data entries: https://docs.google.com/document/d/1VGH9Myq_kk0-qZW8uU_7FD9cMEc4-RvjtmP7y11hRlk/edit?usp=sharing

Code wiki: https://github.com/LSENS-BMI-EPFL/NWB_converter/wiki

Installation

Create environment

conda create -n <env> python=3.11

conda activate <env>

pip install -r pyproject.toml

Old method

Note that this method will not work out of the box and will require you to comment out some functions with missing modules or install these modules manually

conda create -n <env> python=3.9

conda activate <env>

pip install -r <petersenlab_to_nwb_env.txt>

How to use

1. Create '.yaml' files for each session using 'make_yaml_config.py'
2. Create NWB files using 'NWB_conversion.py'

Development

• Some implemented functions are experimenter-dependent (initials). They should be implemented for experimenter-dependent purposes.