Authors: Markus Konrad markus.konrad@laborberlin.com, Bernt Popp bernt.popp@laborberlin.com
The varvis-connector package provides a Python interface for the Varvis API. It includes both a command-line interface
(CLI) and a Python package with a client implementation. The package handles authentication, session management, and
provides methods to retrieve various types of genomic data including SNV annotations, CNV target results, and CNV
segments. It supports environment-based configuration and includes comprehensive error handling.
This project is licensed under the GNU General Public License v3.0 (GPLv3). See the LICENSE file for details.
The full documentation for this project is available at laborberlin.github.io/varvis-connector/
It covers:
- Requirements and installation
- Configuration and environment variables
- Usage guide for the CLI and the Python package
- Python package API documentation
- Development guide
- Changelog