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1. suvtk suvtk Public

   Tool to submit viral sequences to Genbank.

   Python 14 1

2. pyrodigal-rv pyrodigal-rv Public

   Forked from althonos/pyrodigal-gv

   A Pyrodigal extension to predict genes in RNA viruses.

   Python 6

3. genomad genomad Public

   Forked from apcamargo/genomad

   geNomad: Identification of mobile genetic elements

   Python 1

4. add_pyrodigal_rv_models add_pyrodigal_rv_models Public

   Repository with notebooks on how the RNA virus models for pyrodigal-rv were created and benchmarked.

   Jupyter Notebook 1

5. SKA-analysis SKA-analysis Public template

   Perform Split K-mer Analysis to identify sample species (based on k-mers in NGS reads).

   Python

6. co-occurrence co-occurrence Public

   Scripts to correlate the presence of contigs in samples. Useful to find all segments of segmented viruses.

   Python