LeLiu_Projects

This is a repository where I am sharing the process of image-processing projects during my visit in Beth Cimini's lab.

Project 1: Highthroughput phenotyping method of guard cells and subsidiary cells in maize (maize_stomata folder)

• Build the pipeline to automatically segment the guard and subsidiary cells, separately
• Optimize the analysis of images to capture the morphological features of the grass stomata
• Determine the morphological profiling analysis method
• Working on tensorflow and Keras workflow to train the raw object masks or images

Project 2 Fun project to create a CellProfiler plugin to measure the bounding box length and width on Cellprofiler Hackson Day!(CellProfiler _Plugin_folder)

Project 3: 3D segment C.elegan with Paula

Project4: Select a subset of features and run Harmony and/or Scanorama for the whole JUMP dataset (CRISPR, ORF, COMPOUND) with Suganya