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Update fetch_data with ERC dropbox links
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R/fetch_data.R

Lines changed: 9 additions & 17 deletions
Original file line numberDiff line numberDiff line change
@@ -301,71 +301,63 @@ fetch_data <-
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## While EH is not set-up
302302
file_name <- "spe_ERC_annotated.zip"
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url <-
304-
"https://www.dropbox.com/TODO"
304+
"https://www.dropbox.com/scl/fi/jrfc2tllppk52yqm1zyb3/spe_ERC_annotated.zip?rlkey=shi4pn3acf916dtscin32zjsn&dl=1"
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} else if (type == "LFF_spatial_ERC_SRT_pseudobulk") {
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tag <- "LFF_spatial_ERC"
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hub_title <- type
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## While EH is not set-up
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file_name <- "spe_pseudobulk-SpD.rds"
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url <-
312-
"https://www.dropbox.com/TODO"
313-
} else if (type == "LFF_spatial_ERC_SRT") {
314-
tag <- "LFF_spatial_ERC"
315-
hub_title <- type
316-
317-
## While EH is not set-up
318-
file_name <- "spe_pseudobulk-SpD.rds"
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url <-
320-
"https://www.dropbox.com/TODO"
321-
} else if (type == "LFF_spatial_ERC_SRT_modeling_results") {
312+
"https://www.dropbox.com/scl/fi/2cl002smtcl37vaawodil/spe_pseudobulk-SpD.rds?rlkey=6igag1uggpg7h70ruucbl7leb&dl=1"
313+
}else if (type == "LFF_spatial_ERC_SRT_modeling_results") {
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tag <- "LFF_spatial_ERC"
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hub_title <- type
324316

325317
## While EH is not set-up
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file_name <- "modeling_results-SpD.rds"
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url <-
328-
"https://www.dropbox.com/TODO"
320+
"https://www.dropbox.com/scl/fi/4emtnag2x2usb8t4njvb9/modeling_results-SpD.rds?rlkey=d2qr82rz6uargnthkkahrs7e1&dl=1"
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} else if (type == "LFF_spatial_ERC_snRNAseq") {
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tag <- "LFF_spatial_ERC"
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hub_title <- type
332324

333325
## While EH is not set-up
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file_name <- "sce_ERC_subcluster.zip"
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url <-
336-
"https://www.dropbox.com/TODO"
328+
"https://www.dropbox.com/scl/fi/plekynuzpb22ii08pcn4j/sce_ERC_subcluster.zip?rlkey=bsgqc5dx4o0memidhs943qdhx&dl=1"
337329
} else if (type == "LFF_spatial_ERC_snRNAseq_pseudobulk_broad") {
338330
tag <- "LFF_spatial_ERC"
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hub_title <- type
340332

341333
## While EH is not set-up
342334
file_name <- "sce_subcluster_pseudobulk-cell_type_broad.rds"
343335
url <-
344-
"https://www.dropbox.com/TODO"
336+
"https://www.dropbox.com/scl/fi/supihrwunx99ldzztzecm/sce_subcluster_pseudobulk-cell_type_broad.rds?rlkey=uy7zmoifjhetfglrav4i2j0ns&dl=1"
345337
} else if (type == "LFF_spatial_ERC_snRNAseq_pseudobulk_subcluster") {
346338
tag <- "LFF_spatial_ERC"
347339
hub_title <- type
348340

349341
## While EH is not set-up
350342
file_name <- "sce_subcluster_pseudobulk-cell_type_anno.rds"
351343
url <-
352-
"https://www.dropbox.com/TODO"
344+
"https://www.dropbox.com/scl/fi/c1n4i90k5pny7lij3gvxv/sce_subcluster_pseudobulk-cell_type_anno.rds?rlkey=v3kyay0p2i3h24u7c8fx2dn7u&dl=1"
353345
} else if (type == "LFF_spatial_ERC_snRNAseq_modeling_results_broad") {
354346
tag <- "LFF_spatial_ERC"
355347
hub_title <- type
356348

357349
## While EH is not set-up
358350
file_name <- "sce_subcluster_pseudobulk-cell_type_broad.rds"
359351
url <-
360-
"https://www.dropbox.com/TODO"
352+
"https://www.dropbox.com/scl/fi/eu9z1qp3gx5verdadwpyu/sce_subcluster_modeling_results-cell_type_broad.rds?rlkey=lwd66c7x5vdqeky431unanp45&dl=1"
361353
} else if (type == "LFF_spatial_ERC_snRNAseq_modeling_results_subcluster") {
362354
tag <- "LFF_spatial_ERC"
363355
hub_title <- type
364356

365357
## While EH is not set-up
366358
file_name <- "sce_subcluster_pseudobulk-cell_type_anno.rds"
367359
url <-
368-
"https://www.dropbox.com/TODO"
360+
"https://www.dropbox.com/scl/fi/y42pv7k02luvznwqii2rm/sce_subcluster_modeling_results-cell_type_anno.rds?rlkey=17c0ybowjpejdxc71tuxlcfna&dl=1"
369361
}
370362

371363
file_path <- file.path(destdir, file_name)

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