SIGWI

Identification of Signature whistles in the DOLPHINFREE dataset.

Using an original mehtod (DTW + HDBSCAN + manual verification), this repo analyses the whistle contour types (WCTs) and Signature Whistle Types (SWTs) of short-beaked common dolphins during the DOLPHINFREE experiments.

See article (in preparation) for more details.

Description

.
├── README.md
├── WCT_analysis_utils.py		# Functions/classes for analyses
├── dtw_hdbscan_categorisation.py	# Categorisation of contours into WCTs
├── WCT_analysis.ipynb			# Overview and statistics on WCTs and SWTs
├── artwarp-comparison			# Categorisation of contours with ARTwarp
│	├── artwarp-custom			# ARTwarp modified for octave
│	├── ARTwarp_automation.py		# Python script to run ARTwarp on all contours
│	├── WCT_verification.py			# Python script for manual verification
│	└── artwarp_hdbscan_comparison		# Overview and comparison of WCTs obtained from 2 methods
├── resources				# Inputs and outputs of python scripts
│	├── ARTwarp_outputs			# octave and json files
│	├── DF-whistles				# Whistle features and json files
│	└── dtw_resources			# hdbscan categorisation results
└── drafts				# Folder containing unused scripts

What to use

Main results : see WCT_analysis.ipynb.

Comparison with ARTwarp: see artwarp-comparison/artwarp_hdbscan_comparison.ipynb.

Contact

For any additional requests, please contact me at loic.lehnhoff@gmail.com