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LorenFrankLab / non_local_detector Public

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Diffusion#8

Open

edeno wants to merge 65 commits intomainLorenFrankLab/non_local_detector:mainfrom

diffusionLorenFrankLab/non_local_detector:diffusionCopy head branch name to clipboard

Conversation Commits65 (65)Checks Files changed

Open

Diffusion#8
edeno wants to merge 65 commits intomainfrom
diffusion

Commits

Commits on May 2, 2025

Update module docstring
edeno
committed

Commits on May 5, 2025

Add some helper functions
edeno
committed
Update docstring
edeno
committed
Add typing, update docstring for get_n_bins
edeno
committed
Rename `get_grid` to `make_grid`
edeno
committed
Rename `get_track_interior` to `infer_track_interior`
edeno
committed
boundary bins False by default
edeno
committed
Rename function to private to avoid conflict
edeno
committed
Handle bin size sequence
edeno
committed
Move get_track_boundary
edeno
committed
Remove unneeded parameter
edeno
committed
Alias fit_place_grid to fit
edeno
committed
Add gap closing as a parameter
edeno
committed
Turn on boundary for now
edeno
committed
Refactor track_graphDD to track_graph_nd
edeno
committed
Indicate functions private
edeno
committed
Refactor into more private functions. Return place_bin_centers graph
edeno
committed
Update plotting
edeno
committed
Rearange helper function location
edeno
committed
Add ability to calculate linear position on environment
edeno
committed
Add method to get fitted track graph
edeno
committed
Fix call
edeno
committed
More private functions and docstring cleanup
edeno
committed

Commits on May 7, 2025

Add bin information to nd_graph
edeno
committed
Use function from track_linearization
edeno
committed
Shorten name
edeno
committed
Add bin ind to 1D graph
edeno
committed
Add exterior bins to graph
edeno
committed
Use bin ind attribute for distance
edeno
committed
Use helper function for distance
edeno
committed
Fix leftover track_graphDD references
edeno
committed
Make distance_between_bins a cached property
edeno
committed

Commits on May 8, 2025

Fix syntax
edeno
committed
More efficient and handle 1D/nD case `get_bin_ind`
edeno
committed
Fix arguments
edeno
committed
Update environment.py
edeno
committed
Fix names
edeno
committed
Ignore division by zero
edeno
committed
Calculate rw movement variance function
edeno
committed
Fix name
edeno
committed
Add functions for bin coordinates and serialization
edeno
committed
Remove unused attributes
edeno
committed
Set index name
edeno
committed
Simpler names for `load_env`, `save_env`, `fit_place_grid`
edeno
committed
Remove 1D dataframes and track graphs
edeno
committed
Use indexing
edeno
committed
Fix names and minor errors
edeno
committed
Fix typing and docstring
edeno
committed
Handle n-D
edeno
committed
Fix docstring
edeno
committed
Fix criterion
edeno
committed
Simpler nd graph construction
edeno
committed
Make sure functions work with n-D
edeno
committed
Only return the diagonal
edeno
committed
Don't add boundary bins
edeno
committed
Update so distance between each bin is added
edeno
committed
Make functions private, remove unused functions
edeno
committed

Commits on May 9, 2025

Handle lists
edeno
committed
Add tests
edeno
committed
Add more tests
edeno
committed
Remove unintended line
edeno
committed
Add more helper functions
edeno
committed
Cleanup tests
edeno
committed
Add diffusion code
edeno
committed
Add notebook
edeno
committed

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