Skip to content

WIP: Add Histology, MicroCT, and Electrode Localization Pipelines #1294

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Draft
wants to merge 15 commits into
base: master
Choose a base branch
from

Merge branch 'master' into histology

5fc4e06
Select commit
Loading
Failed to load commit list.
Draft

WIP: Add Histology, MicroCT, and Electrode Localization Pipelines #1294

Merge branch 'master' into histology
5fc4e06
Select commit
Loading
Failed to load commit list.
Codecov / codecov/project succeeded Aug 6, 2025 in 1s

69.34% (+0.06%) compared to 476a648

View this Pull Request on Codecov

69.34% (+0.06%) compared to 476a648

Details

Codecov Report

❌ Patch coverage is 9.09091% with 60 lines in your changes missing coverage. Please review.
✅ Project coverage is 69.34%. Comparing base (476a648) to head (5fc4e06).
⚠️ Report is 4 commits behind head on master.

Files with missing lines Patch % Lines
src/spyglass/histology/v1/histology.py 0.00% 17 Missing ⚠️
src/spyglass/micro_ct/v1/micro_ct.py 0.00% 15 Missing ⚠️
...glass/electrode_localization/localization_merge.py 0.00% 12 Missing ⚠️
...rc/spyglass/electrode_localization/v1/histology.py 0.00% 8 Missing ⚠️
src/spyglass/electrode_localization/v1/micro_ct.py 0.00% 8 Missing ⚠️
Additional details and impacted files 
@@            Coverage Diff             @@
##           master    #1294      +/-   ##
==========================================
+ Coverage   69.27%   69.34%   +0.06%     
==========================================
  Files         103      108       +5     
  Lines       12336    12597     +261     
==========================================
+ Hits         8546     8735     +189     
- Misses       3790     3862      +72

☔ View full report in Codecov by Sentry.
📢 Have feedback on the report? Share it here.

🚀 New features to boost your workflow:
  • ❄️ Test Analytics: Detect flaky tests, report on failures, and find test suite problems.
View more details on Codecov