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Track files on disk #1431

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Track files on disk #1431

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17 changes: 17 additions & 0 deletions maintenance_scripts/cleanup.py
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Original file line number Diff line number Diff line change
Expand Up @@ -11,6 +11,11 @@
from pathlib import Path

from spyglass.common import AnalysisNwbfile, Nwbfile
from spyglass.common.common_file_tracking import (
AnalysisFileIssues,
FileMatch,
TrackedFile,
)
from spyglass.common.common_version import SpyglassVersions
from spyglass.decoding.decoding_merge import DecodingOutput
from spyglass.decoding.v1.clusterless import schema as clusterless_schema
Expand Down Expand Up @@ -72,6 +77,16 @@ def cleanup_temp_dir(days_old: int = 7, dry_run: bool = True):
print(f"Error cleaning temp_dir: {e}")


def trask_files_on_disk():
pop_kwargs = dict(
order="random", display_progress=True, reserve_jobs=True, processes=15
)

TrackedFile().run()
FileMatch().populate(**pop_kwargs)
AnalysisFileIssues().populate(**pop_kwargs)


def main():
print("Updating Spyglass versions table...")
SpyglassVersions().fetch_from_pypi()
Expand All @@ -81,6 +96,8 @@ def main():
cleanup_external_files()
print("Cleaning up temporary directory...")
cleanup_temp_dir(dry_run=False)
print("Tracking files on disk...")
trask_files_on_disk()


if __name__ == "__main__":
Expand Down
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