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Releases: LorenFrankLab/spyglass

0.5.5

06 Aug 16:41
@edeno edeno
0.5.5
4a198e5
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0.5.5 Latest
Latest

What's Changed

New Contributors

Database Changes

To update your database to reflect these changes, we recommend running the following script. If you have any issues, please contact maintainers via our Discussions page.

# -- For TrackGraph --
from spyglass.linearization.v1.main import TrackGraph  # noqa

TrackGraph.alter()  # Add edge map parameter

# -- For dropping deprecated tables --
import datajoint as dj

dj.FreeTable(dj.conn(), "common_nwbfile.analysis_nwbfile_log").drop()
dj.FreeTable(dj.conn(), "common_session.session_group").drop()

# -- For v0 recompute --
from spyglass.spikesorting.v0.spikesorting_recording import (
    SpikeSortingRecording,
    SpikeSortingRecordingSelection,
    IntervalList,
)

SpikeSortingRecording().alter()
SpikeSortingRecording().update_ids()

# -- For v1 recompute --
from spyglass.spikesorting.v1.recording import (
    SpikeSortingRecording,
    SpikeSortingRecordingSelection,
    AnalysisNwbfile,
)

SpikeSortingRecording().alter()
SpikeSortingRecording().update_ids()

# -- For LFP pipeline --
from spyglass.lfp.lfp_imported import ImportedLFP
from spyglass.lfp.lfp_merge import LFPOutput

if len(ImportedLFP()) or len(LFPOutput.ImportedLFP()):
    raise ValueError(
        "Existing entries found and would be dropped in update. Please delete "
        + "entries or start a GitHub discussion for migration assistance."
        + f"\nImportedLFP: {len(ImportedLFP())}"
        + f"\nLFPOutput.ImportedLFP: {len(LFPOutput.ImportedLFP())}"
    )

table = LFPOutput().ImportedLFP()
table_name = table.full_table_name

if len(drop_list := table.connection.dependencies.descendants(table_name)) > 1:
    drop_list = [x for x in drop_list if x != table_name]
    raise ValueError(
        "Downstream tables exist and would be dropped in update."
        + "Please drop the following tables first: \n"
        + "\n ".join([str(t) for t in drop_list])
    )

LFPOutput().ImportedLFP().drop_quick()
ImportedLFP().drop()

Full Changelog: 0.5.4...0.5.5

Contributors

kabilar, edeno, and 6 other contributors
Assets 2
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0.5.4

20 Dec 17:09
@edeno edeno
0.5.4
75ad067
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0.5.4

What's Changed

New Contributors

Full Changelog: 0.5.3...0.5.4

Contributors

bendichter, magland, and 3 other contributors
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0.5.3

27 Aug 16:40
@CBroz1 CBroz1
0.5.3
ecf468e
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0.5.3

Database Changes

This release (a) removes the old 'common' ripple pipeline in favor of the dedicated subpackage (see #1061), and (b) edits the definitions of PositionIntervalMap and PositionGroup (see #870, #1008). Users with existing databases should run the following:

import datajoint as dj
from spyglass.common.common_behav import PositionIntervalMap
from spyglass.decoding.v1.core import PositionGroup

dj.schema("common_ripple").drop()
PositionIntervalMap.alter()
PositionGroup.alter()

Software Changes

New Contributors

Full Changelog: 0.5.2...0.5.3

Contributors

edeno, khl02007, and 5 other contributors
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0.5.2

22 Apr 22:28
@edeno edeno
0.5.2
96691c3
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0.5.2

What's Changed

Full Changelog: 0.5.1...0.5.2

Contributors

edeno, CBroz1, and samuelbray32
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0.5.1

08 Mar 16:14
@edeno edeno
0.5.1
87bd96e

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0.5.1

What's Changed

New Contributors

Full Changelog: 0.5.0...0.5.1

See also CHANGELOG.md

Contributors

edeno, khl02007, and 4 other contributors
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0.5.0

10 Feb 02:13
@edeno edeno
0.5.0
be6e414
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0.5.0

What's Changed

New Contributors

Full Changelog: 0.4.3...0.5.0

See also CHANGELOG.md

Contributors

magland, edeno, and 6 other contributors
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