Quickfix: Run add_optogenetic_epochs

[samuelbray32]

• Call add_optogenetic_epochs within _create__nwb
• Fix write error caused by differently shaped spatial nodes arrays between optogenetic epochs
• add a changelog to the repo

[edeno]

looks good to me with a changelog update

[codecov]

Codecov Report

❌ Patch coverage is 90.90909% with 2 lines in your changes missing coverage. Please review.
✅ Project coverage is 89.53%. Comparing base (cff697b) to head (08f704a).
⚠️ Report is 1 commits behind head on main.

Files with missing lines	Patch %	Lines
src/trodes_to_nwb/convert_optogenetics.py	90.00%	2 Missing ⚠️

Additional details and impacted files

@@            Coverage Diff             @@
##             main     #135      +/-   ##
==========================================
+ Coverage   89.48%   89.53%   +0.05%     
==========================================
  Files          13       13              
  Lines        1693     1711      +18     
==========================================
+ Hits         1515     1532      +17     
- Misses        178      179       +1     

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[Copilot]

Pull Request Overview

This PR implements a quickfix to properly call add_optogenetic_epochs within the NWB creation process and addresses a write error caused by differently shaped spatial node arrays between optogenetic epochs.

• Integrate add_optogenetic_epochs function call into the main NWB creation workflow
• Fix array shape inconsistencies in optogenetic epoch spatial filter data by padding arrays to uniform dimensions
• Add fs_gui_dir parameter support throughout the conversion pipeline to enable optogenetic file discovery

Reviewed Changes

Copilot reviewed 5 out of 5 changed files in this pull request and generated 1 comment.

Show a summary per file

File	Description
src/trodes_to_nwb/convert.py	Adds fs_gui_dir parameter and calls add_optogenetic_epochs in _create_nwb
src/trodes_to_nwb/convert_optogenetics.py	Implements array padding logic to fix spatial node shape inconsistencies
src/trodes_to_nwb/tests/test_convert.py	Updates test calls to include fs_gui_dir parameter
src/trodes_to_nwb/tests/test_convert_optogenetics.py	Updates test to expect corrected array shape
CHANGELOG.md	Documents the optogenetics-related fixes

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