Search results

NaNs during edge reconstruction AUROC computation

Status: Open.

#138 In Lotfollahi-lab/nichecompass;

· dorien-er opened on Feb 18, 2026

[Bug fix] MLAMI evaluation returns last batch only

Status: Open.

#137 In Lotfollahi-lab/nichecompass;

· DabinJeong opened on Jan 20, 2026

Sub-clustering workflow and batch correction within specific niches

Status: Open.

#136 In Lotfollahi-lab/nichecompass;

· zhouzhendiao opened on Dec 31, 2025

anndata does not use .read() but read_h5ad()

Status: Open.

#135 In Lotfollahi-lab/nichecompass;

· FedericaPersiani opened on Dec 14, 2025

Xenium/visium HD tutorials

Status: Open.

#134 In Lotfollahi-lab/nichecompass;

· notgivenby opened on Nov 6, 2025

Installation is brocken

Status: Open.

#128 In Lotfollahi-lab/nichecompass;

· notgivenby opened on Nov 1, 2025

install issue `GLIBC_2.29' not found

Status: Open.

#125 In Lotfollahi-lab/nichecompass;

· KunHHE opened on Oct 12, 2025

pyg::neighbor_sample() error during training

Status: Open.

#124 In Lotfollahi-lab/nichecompass;

· ioansarr opened on Oct 3, 2025

IndexError when running 'compute_communication_gp_network'

Status: Open.

#123 In Lotfollahi-lab/nichecompass;

· Yun-Ching-Chen opened on Oct 2, 2025

Gene program resign

Status: Open.

#97 In Lotfollahi-lab/nichecompass;

· HarryZhang1224 opened on Apr 22, 2025