MAINT: Unpin Cython version constraint for Cython >= 3.1.0 (#5057) - #5468

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AkshitBoora wants to merge 6 commits into

MDAnalysis:developfrom

AkshitBoora:fix-cython-3.1-issue-5057

Commits on Sep 7, 2026

MAINT: Unpin Cython version constraint for Cython >= 3.1.0 (#5057)
Akshit Boora
committed
7ef41de
CI: Pin cython<3.1 for numpy_min minimum dependency test matrix
Akshit Boora
committed
0c227c0
MAINT: Add CYTHON_TRACE=1 and CYTHON_TRACE_NOGIL=1 macros to all extension compile args (#5057)
Akshit Boora
committed
8d2e559
STYLE: Format setup.py to comply with black line-length (#5057)
Akshit Boora
committed
a834a11
MAINT: Disable cython_linetrace for Cython >= 3.1.0 to prevent upstream linetrace crashes (#5057)
Akshit Boora
committed
256ebfc

Commits on Sep 9, 2026

FIX: Disable Cython.Coverage plugin and fix black formatting for Cython 3.1+ compatibility (#5057)
Akshit Boora
committed
63707d6