Add QC summary to HTML report - #1476
Open
tsalo wants to merge 7 commits into
Open
Conversation
Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
Restrict desc-decay_metrics.json writing to fitmode=='all' (the tedana workflow path); make generate_decay_metrics raise ValueError on non-1D input so t2smap --fitmode ts misuse fails loudly instead of silently flattening voxel x time. Document the S0 zero-fill exclusion and align the new tests with the module import convention. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
Degrade missing n_voxels_fit_mask/n_voxels_base_mask to 'n/a' instead of rendering the literal 'None', matching the card's graceful-missing-field convention. Tidy the two new test imports. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
Member
Author
Codecov Report❌ Patch coverage is
Additional details and impacted files@@ Coverage Diff @@
## main #1476 +/- ##
==========================================
+ Coverage 90.43% 90.51% +0.08%
==========================================
Files 31 31
Lines 5100 5186 +86
Branches 937 952 +15
==========================================
+ Hits 4612 4694 +82
- Misses 326 327 +1
- Partials 162 165 +3 ☔ View full report in Codecov by Harness. 🚀 New features to boost your workflow:
|
tsalo
marked this pull request as ready for review
July 21, 2026 17:07
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.

Closes #1472.
Changes proposed in this pull request:
desc-decay_metrics.jsonfile containing the T2*/S0 estimation-related metrics for the Info tab.