croissant-baker: v0.1.0

0.1.0 (2026-04-16)

Features

• activate PyPI publishing (d306be0)
• Activate release-please deployment to PyPI. (d96c271)
• Add CLI metadata overrides with MIMIC-IV demo example (b317fc0)
• Add CLI metadata overrides with MIMIC-IV demo example (f482c0d)
• add FHIR NDJSON/Bundle handler (f255b59)
• add FHIR NDJSON/Bundle handler and generic JSON/JSONL handler (bc43ade)
• add glob-based file inclusion and exclusion filtering with dry run support (ada33ed)
• add glob-based file inclusion and exclusion filtering with dry-run support (f8cde9c)
• Add initial Croissant metadata generation CLI (8b60763)
• Add initial Croissant metadata generation CLI (2e552c9)
• add MEDS Parquet support and test (70865ac)
• add MEDS Parquet support and test (032a789)
• add MIMIC-IV OMOP test support (closes #13) (e7f9a5c)
• add MIMIC-IV OMOP test support (closes #13) (505b27d)
• add native RAI CLI flags alongside YAML workflow (15e150a)
• add native RAI CLI flags alongside YAML workflow (8c46646)
• add Open Targets evaluation framework (f4d59f5)
• add RAI metadata support with PROV-O via YAML config (4adbff9)
• CSV streaming + type conflict handling for the full 2 datasets (0ebed58)
• CSV streaming + type conflict handling for the full 2 datasets (e79370e)
• fix PyPI publishing, docs workflow, and site URLs (89b94fe)
• group partitioned Parquet tables into FileSet + RecordSet (9f844e9)
• Make --creator required and add automated testing infrastructure (e29f9bb)
• Make --creator required and add automated testing infrastructure (8b8ca65)
• Open Targets external evaluation and committed test subset (3640964)
• Parquet quality fixes and nested type support (536adf4)
• rename package from croissant-maker to croissant-baker (b8c0020)
• rename package from croissant-maker to croissant-baker (1c306aa)
• Setup basic project structure (#1) (864c853)
• warn on missing Croissant spec-required fields and clarify dev … (6b1e940)
• warn on missing Croissant spec-required fields and clarify dev workflow in README (d65bc56)

Bug Fixes

• add newline at the end of files (17616b3)
• add warning log on skipping malformed image entries in summary (87dc97e)
• adjust num_images to reflect processed items only in image summary (7634337)
• close ParquetFile handle to prevent resource leak (#54) (b6240ea)
• close ParquetFile handle to prevent resource leak (#54) (c6e1caf)
• correct handler sniffing and FileSet glob precision (25a4058)
• filter docs workflow paths, build wheel-only, add pypi environment (57bbda0)
• image: read TIFF dimensions from tags to avoid swapped metadata (aa9a80f)
• image: read TIFF dimensions from tags to avoid swapped metadata (cfbd635)
• prevent auto-generation of output filename when dry-run is enabled (0a7eb3e)
• rebase on main, wire include/exclude/dry-run into CLI and tests (c42fb20)
• remove file:// url fallback to prevent local path leakage (fc47ea2)
• remove file:// url fallback to prevent local path leakage (07540de)
• resolve KeyError in image_handler properties (#38) (494baf2)
• resolve KeyError in image_handler properties (#38) (ec93a4b)
• restore technical_overview.md and delete file_filtering.md as intended (4295941)
• set PYTHONPATH in generate.py subprocess (724fb6f)
• update site URL to lcp.mit.edu, add PyPI badges and install sections (7ef676f)
• wfdb: handle header parse failures (2b3ee52)
• wfdb: handle header parse failures (afd69c7)

Performance Improvements

• fast CSV hashing and opt-in row counting (70bdfc6)
• fast CSV hashing and opt-in row counting (1a34e1a)

Documentation

• add --count-csv-rows to README (725c6d3)
• add auto-generated comment to cli.md (1017de0)
• add comprehensive technical overview of the project architecture, components, and handler system. (8365bc4)
• add comprehensive technical overview of the project architecture, components, and handler system. (3d8f87b)
• add content pages and remove technical_overview.md (2ff228a)
• add generate.py and auto-generated reference files (f11f150)
• add handler metadata for docs automation (d037ead)
• add MkDocs documentation site with auto-generated reference (32bba8f)
• add mkdocs infrastructure, deps, and logo (fdd9a11)
• add PR report for modern Python tooling (bc5db4b)
• add PR report for Open Targets partitioned Parquet support (22930eb)
• document release-please workflow in README (49bee84)
• remove technical overview documentation (87bade5)
• slim README, add DEVELOPMENT.md, docs CI workflow (2bc647d)
• update README for uv-based developer workflow (65731f5)

Build System

• deps-dev: update pre-commit requirement from >=3.0.0 to >=4.5.1 (8c41078)
• deps-dev: update pre-commit requirement from >=3.0.0 to >=4.5.1 (e9ee313)
• deps: bump actions/checkout from 4 to 6 (b71db40)
• deps: bump actions/checkout from 4 to 6 (804f9aa)
• deps: bump astral-sh/setup-uv from 5 to 7 (3427a4a)
• deps: bump astral-sh/setup-uv from 5 to 7 (a819966)
• deps: update pillow requirement from >=11.0.0 to >=12.2.0 (30e23d2)
• deps: update pillow requirement from >=11.0.0 to >=12.2.0 (5a70ff8)
• deps: update pyarrow requirement from >=15.0.0 to >=23.0.1 (7594dae)
• deps: update pyarrow requirement from >=15.0.0 to >=23.0.1 (82e4b38)
• deps: update rich requirement from >=13.0.0 to >=15.0.0 (8c432cb)
• deps: update rich requirement from >=13.0.0 to >=15.0.0 (cbd5561)
• deps: update wfdb requirement from >=4.0.0 to >=4.3.1 (66613a8)
• deps: update wfdb requirement from >=4.0.0 to >=4.3.1 (739e681)
• migrate to hatchling + uv with PEP 735 dependency groups (ac1076d)