Restart master branch

CITATION.bib

@@ -0,0 +1,14 @@
+@article{Hoffimann2018,
+  title={GeoStats.jl – High-performance geostatistics in Julia},
+  author={Hoffimann, Júlio},
+  journal={Journal of Open Source Software},
+  publisher={The Open Journal},
+  volume={3},
+  pages={692},
+  number={24},
+  ISSN={2475-9066},
+  DOI={10.21105/joss.00692},
+  url={http://dx.doi.org/10.21105/joss.00692},
+  year={2018},
+  month={Apr}
+}

CONTRIBUTING.md

@@ -0,0 +1,6 @@
+# Thank you
+
+First off, thank you for considering contributing to `GeoStats.jl`.
+It’s people like you that make this project so much fun!
+
+Please follow the [guidelines](https://juliaearth.github.io/GeoStats.jl/stable/contributing/guidelines.html) in the documentation.

LICENSE

@@ -0,0 +1,21 @@
+MIT License
+
+Copyright (c) 2015 Júlio Hoffimann <[email protected]> and contributors
+
+Permission is hereby granted, free of charge, to any person obtaining a copy
+of this software and associated documentation files (the "Software"), to deal
+in the Software without restriction, including without limitation the rights
+to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+copies of the Software, and to permit persons to whom the Software is
+furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in all
+copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+SOFTWARE.

Project.toml

@@ -0,0 +1,58 @@
+name = "GeoStats"
+uuid = "dcc97b0b-8ce5-5539-9008-bb190f959ef6"
+author = "Júlio Hoffimann <[email protected]>"
+version = "0.45.5"
+
+[deps]
+CategoricalArrays = "324d7699-5711-5eae-9e2f-1d82baa6b597"
+Chain = "8be319e6-bccf-4806-a6f7-6fae938471bc"
+Dates = "ade2ca70-3891-5945-98fb-dc099432e06a"
+DensityRatioEstimation = "ab46fb84-d57c-11e9-2f65-6f72e4a7229f"
+Distances = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7"
+GeoStatsBase = "323cb8eb-fbf6-51c0-afd0-f8fba70507b2"
+GeoStatsModels = "ad987403-13c5-47b5-afee-0a48f6ac4f12"
+GeoStatsSolvers = "50e95529-e670-4fa6-84ad-e28f686cc091"
+GeoStatsTransforms = "725d9659-360f-4996-9c94-5f19c7e4a8a6"
+GeoTables = "e502b557-6362-48c1-8219-d30d308dcdb0"
+LossFunctions = "30fc2ffe-d236-52d8-8643-a9d8f7c094a7"
+Meshes = "eacbb407-ea5a-433e-ab97-5258b1ca43fa"
+PointPatterns = "e61b41b6-3414-4803-863f-2b69057479eb"
+Reexport = "189a3867-3050-52da-a836-e630ba90ab69"
+Rotations = "6038ab10-8711-5258-84ad-4b1120ba62dc"
+ScientificTypes = "321657f4-b219-11e9-178b-2701a2544e81"
+Statistics = "10745b16-79ce-11e8-11f9-7d13ad32a3b2"
+StatsLearnModels = "c146b59d-1589-421c-8e09-a22e554fd05c"
+TableTransforms = "0d432bfd-3ee1-4ac1-886a-39f05cc69a3e"
+Tables = "bd369af6-aec1-5ad0-b16a-f7cc5008161c"
+Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d"
+Variography = "04a0146e-e6df-5636-8d7f-62fa9eb0b20c"
+
+[weakdeps]
+Makie = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a"
+
+[extensions]
+GeoStatsMakieExt = "Makie"
+
+[compat]
+CategoricalArrays = "0.10"
+Chain = "0.5"
+DensityRatioEstimation = "1.0"
+Distances = "0.10"
+GeoStatsBase = "0.38"
+GeoStatsModels = "0.1"
+GeoStatsSolvers = "0.7"
+GeoStatsTransforms = "0.1"
+GeoTables = "1.8"
+LossFunctions = "0.11"
+Makie = "0.19.10"
+Meshes = "0.35"
+PointPatterns = "0.7"
+Reexport = "1.0"
+Rotations = "1.5"
+ScientificTypes = "3.0"
+StatsLearnModels = "0.2"
+TableTransforms = "1.9"
+Tables = "1.10"
+Unitful = "1.15"
+Variography = "0.19"
+julia = "1.9"

docs/Project.toml

@@ -0,0 +1,29 @@
+[deps]
+AbstractTrees = "1520ce14-60c1-5f80-bbc7-55ef81b5835c"
+CSV = "336ed68f-0bac-5ca0-87d4-7b16caf5d00b"
+Clustering = "aaaa29a8-35af-508c-8bc3-b662a17a0fe5"
+CoDa = "5900dafe-f573-5c72-b367-76665857777b"
+DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0"
+Documenter = "e30172f5-a6a5-5a46-863b-614d45cd2de4"
+DocumenterTools = "35a29f4d-8980-5a13-9543-d66fff28ecb8"
+GeoIO = "f5a160d5-e41d-4189-8b61-d57781c419e3"
+GeoStats = "dcc97b0b-8ce5-5539-9008-bb190f959ef6"
+GeoStatsBase = "323cb8eb-fbf6-51c0-afd0-f8fba70507b2"
+GeoStatsImages = "7cd16168-b42c-5e7d-a585-4f59d326662d"
+ImageQuilting = "e8712464-036d-575c-85ac-952ae31322ab"
+InteractiveUtils = "b77e0a4c-d291-57a0-90e8-8db25a27a240"
+JSServe = "824d6782-a2ef-11e9-3a09-e5662e0c26f9"
+MLJ = "add582a8-e3ab-11e8-2d5e-e98b27df1bc7"
+MLJClusteringInterface = "d354fa79-ed1c-40d4-88ef-b8c7bd1568af"
+MLJDecisionTreeInterface = "c6f25543-311c-4c74-83dc-3ea6d1015661"
+Meshes = "eacbb407-ea5a-433e-ab97-5258b1ca43fa"
+Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c"
+Statistics = "10745b16-79ce-11e8-11f9-7d13ad32a3b2"
+StratiGraphics = "135379e1-83be-5ae7-9e8e-29dade3dc6c7"
+Tables = "bd369af6-aec1-5ad0-b16a-f7cc5008161c"
+TransformsBase = "28dd2a49-a57a-4bfb-84ca-1a49db9b96b8"
+TuringPatterns = "fde5428d-3bf0-5ade-b94a-d334303c4d77"
+WGLMakie = "276b4fcb-3e11-5398-bf8b-a0c2d153d008"
+
+[compat]
+Documenter = "0.27"

docs/make.jl

@@ -0,0 +1,99 @@
+using Documenter, GeoStats
+using DocumenterTools: Themes
+
+using Random: AbstractRNG
+
+# transforms api
+using TransformsBase
+
+# external solvers
+using ImageQuilting
+using TuringPatterns
+using StratiGraphics
+
+# IO packages
+using GeoIO
+
+istravis = "TRAVIS" ∈ keys(ENV)
+
+Themes.compile(joinpath(@__DIR__,"src/assets/light.scss"), joinpath(@__DIR__,"src/assets/themes/documenter-light.css"))
+Themes.compile(joinpath(@__DIR__,"src/assets/dark.scss"), joinpath(@__DIR__,"src/assets/themes/documenter-dark.css"))
+
+makedocs(
+  format = Documenter.HTML(
+    assets=["assets/favicon.ico", asset("https://fonts.googleapis.com/css?family=Montserrat|Source+Code+Pro&display=swap", class=:css)],
+    prettyurls = istravis,
+    mathengine = KaTeX(Dict(
+      :macros => Dict(
+        "\\cov" => "\\text{cov}",
+        "\\x"   => "\\boldsymbol{x}",
+        "\\z"   => "\\boldsymbol{z}",
+        "\\l"   => "\\boldsymbol{\\lambda}",
+        "\\c"   => "\\boldsymbol{c}",
+        "\\C"   => "\\boldsymbol{C}",
+        "\\g"   => "\\boldsymbol{g}",
+        "\\G"   => "\\boldsymbol{G}",
+        "\\f"   => "\\boldsymbol{f}",
+        "\\F"   => "\\boldsymbol{F}",
+        "\\R"   => "\\mathbb{R}",
+        "\\1"   => "\\mathbb{1}"
+      )
+    ))
+  ),
+  sitename = "GeoStats.jl",
+  authors = "Júlio Hoffimann",
+  pages = [
+    "Home" => "index.md",
+    "Quickstart" => "quickstart.md",
+    "Reference guide" => [
+      "Data" => "data.md",
+      "Domains" => "domains.md",
+      "Problems" => "problems.md",
+      "Solvers" => [
+        "solvers/overview.md",
+        "solvers/builtin.md",
+        "solvers/external.md"
+      ],
+      "Validation" => "validation.md",
+      "Clustering" => "clustering.md",
+      "Declustering" => "declustering.md",
+      "Geospatial transforms" => "transforms.md",
+      "Geospatial queries" => "queries.md",
+      "Variography" => [
+        "variography/empirical.md",
+        "variography/theoretical.md",
+        "variography/fitting.md"
+      ],
+      "Kriging" => "kriging.md",
+      "Point patterns" => [
+        "pointpatterns/pointprocs.md",
+        "pointpatterns/pointops.md"
+      ],
+      "Ensembles" => "ensembles.md",
+      "Weighting" => "weighting.md",
+      "Miscellaneous" => "miscellaneous.md",
+      "Visualization" => "visualization.md"
+    ],
+    "Contributing" => [
+      "contributing/guidelines.md",
+      "contributing/solvers.md"
+    ],
+    "Resources" => [
+      "resources/education.md",
+      "resources/publications.md",
+      "resources/ecosystem.md"
+    ],
+    "About" => [
+      "Community" => "about/community.md",
+      "License" => "about/license.md",
+      "Citing" => "about/citing.md"
+    ],
+    "Index" => "links.md"
+  ]
+)
+
+repo = "github.com/JuliaEarth/GeoStatsDocs.git"
+
+withenv("GITHUB_REPOSITORY" => repo) do
+  deploydocs(; repo, versions=["stable" => "v^", "dev" => "dev"])
+end

docs/src/about/citing.md

@@ -0,0 +1,22 @@
+If you find [GeoStats.jl](https://github.com/JuliaEarth/GeoStats.jl)
+useful in your work, please consider citing it:
+
+[![JOSS](https://img.shields.io/badge/JOSS-10.21105%2Fjoss.00692-brightgreen?style=flat-square)](https://doi.org/10.21105/joss.00692)
+[![DOI](https://img.shields.io/badge/DOI-10.5281%2Fzenodo.3875233-blue?style=flat-square)](https://zenodo.org/badge/latestdoi/33827844)
+
+```bibtex
+@ARTICLE{Hoffimann2018,
+  title={GeoStats.jl – High-performance geostatistics in Julia},
+  author={Hoffimann, Júlio},
+  journal={Journal of Open Source Software},
+  publisher={The Open Journal},
+  volume={3},
+  pages={692},
+  number={24},
+  ISSN={2475-9066},
+  DOI={10.21105/joss.00692},
+  url={https://dx.doi.org/10.21105/joss.00692},
+  year={2018},
+  month={Apr}
+}
+```

docs/src/about/community.md

@@ -0,0 +1,7 @@
+We use the **Zulip** platform to chat and help the community of users.
+Consider creating an account and pressing `?` on the keyboard there for
+navigation instructions.
+
+Click on the image to join the channel:
+
+[![Zulip](../images/zulip.png)](https://julialang.zulipchat.com/#narrow/stream/276201-geostats.2Ejl)

docs/src/about/license.md

@@ -0,0 +1,24 @@
+The [GeoStats.jl](https://github.com/JuliaEarth/GeoStats.jl) project is
+licensed under the [MIT](https://opensource.org/licenses/MIT) license:
+
+    MIT License
+
+    Copyright (c) 2015 Júlio Hoffimann <[email protected]> and contributors
+
+    Permission is hereby granted, free of charge, to any person obtaining a copy
+    of this software and associated documentation files (the "Software"), to deal
+    in the Software without restriction, including without limitation the rights
+    to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+    copies of the Software, and to permit persons to whom the Software is
+    furnished to do so, subject to the following conditions:
+
+    The above copyright notice and this permission notice shall be included in all
+    copies or substantial portions of the Software.
+
+    THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+    IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+    FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+    AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+    LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+    OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+    SOFTWARE.