v1.7.0

A minor release including 1) new density contour plots for validating eddy parameterizations; 2) E3SM-Unified testing in the test suite; 3) a smarter config parser shared with compass. This release also includes some minor clean up and bug fixes.

Minor enhancement:

• Add flake8 to dev environment #870
• Switch to MpasConfigParser for config options #873
• Switch to using f90nml for reading namelists #874
• Add WOCE and SOSE density contour plots #877
• Add E3SM-Unified support to test suite #879

Bug fixes

• Reduce ncclimo tasks for Anvil to 6 #865
• Update test suite to kill jobs with invalid deps #872
• Add back legend for Antarctic melt flux time series #878

Clean up:

• Various pieces of clean up #875

Contributors

@darincomeau
@mark-petersen
@milenaveneziani
@xylar

v1.6.1

Bug-fix release

Minor enhancement:

• Add North Atlantic and North Pacific comparison grids #858

Bug fixes

• Fix masking of surface climatologies #861

Contributors

@xylar
@milenaveneziani
@golaz
@ytakano3

v1.6.0

Minor release that includes a new capability to plot transects on the native MPAS mesh and many bug fixes.

Major enhancement

• Add support for transects plotted on the native MPAS-Ocean mesh #718

Minor enhancements

• Improve model vs. obs transects on the native MPAS mesh #851
• Add an anomaly tag #853
• Print the URL for the web page #854

Clean up

• Simplify example configs #846
• Update Cori example config and job scripts #845

Bug fixes

• Fix calls to ncclimo for NCO 5.0.4 #848

Documentation

• Clarify readme for developers #847
• Switch from m2r to m2r2 #852

Continuous Integration and Testing

• Add python 3.10 support and testing #850
• chmod common HTML directory in test suite #855

Contributors

@xylar
@milenaveneziani
@sbrus89
@mark-petersen
@darincomeau

v1.5.0

Minor release that includes the addition of support for the mache package providing information about E3SM supported machines; many bug fixes; and a generalized test suite that also uses mache.

Minor enhancements

• Support E3SM machines via the mache package #827
• Add machine config files to package data #832
• Update mache to >=1.1.2 #835
• Switch to ScientificColourMaps7 #840

Clean up

• Copy config files to HTML dir before running #839

Bug fixes

• Fix lon/lat mask generation call #824
• Fix the name of the chlorophyll field for comparison #826
• Fix list command #828
• Add missing config files to package #831
• Add machine config files to package data #832
• Remove extra factor of landIceFraciton in melt fluxes #829
• Don't rotate lon. labels in polar plots #838

Continuous Integration and Testing

• Update xarray-master test on Azure to latest ubuntu #821
• Constrain to exclude python 3.10 #830
• Add general test suite #833
• Test-suite fixes for cori-haswell #834

Contributors

@xylar
@milenaveneziani
@ytakano3

v1.4.0

Minor release that includes performance improvements, particularly for transport time series and mask file generation. Example config files and job scripts have been updated for E3SM-Unified 1.5.0.

Minor enhancements

• Added 0 contour in MOC global #778
• Switch to using geometric_features aggregation lookup #784
• Improve performance of timeSeriesTransport task #786
• Switch to MPAS-Tools python command-line tools for region mask creation #783
• Create MOC masks like other region masks #793
• Switch to python transect masks #792
• Add 2 new transects to transport time series #791
• Add a yaml file for building a dev environment #798
• Switch to file spec for developemnt env. #799
• Select time-series colors from config options #802
• Add support for writing out pdfs in addition to pngs #803
• Add more control over font sizes #806
• Add mapParallelExec config option #814
• Add ncremap parallel exec #816
• Update geometric_features version for new MOC basins #817

Clean up

• Update python version to >= 3.7 #775
• Rename the example meshes to new E3SMv2 names #801
• Move timeSeriesAntarcticMelt legends to upper left #805
• Make time-series plots smaller #807
• Adjust cartopy grid lines #808

Bug fixes

• Update test suites so each test run is in its own directory #779
• Fix indexing issues with the MOC #794
• Iterate over region masks in oceanRegionalProfile sums #795
• Fix missing is3d attribute #804

Documentation

• Update documentation related to region groups #776
• Update readme to clarify dev instructions #810
• Update docs and example configs for E3SM-Unified 1.5.0 #819

Continuous Integration and Testing

• Improve LCRC test suites and add them for Compy and Cori #785
• Update test suites #788
• Various fixes and updates to test suites #797
• Update vmimages in Azure to latest #815

Contributors

@xylar
@milenaveneziani

v1.3.0

Minor release.

Minor enhancements

• Add job script and test suite for chrysalis #768
• Add second axis to OHC anomaly time series #769
• Add more statistics to global climatology maps #771

Clean up

• Add capability to limit the lengths of plot titles #770

Bug fixes

• Fix ocean regions race condition #764

Documentation

• Document new Hovmoller Ocean Regions task #761

Contributors

@xylar
@milenaveneziani
@golaz
@vanroekel

v1.2.9

Minor release.

Major Enhancements

• Add a test suite for MPAS-Analysis on Anvil #741

Minor Enhancements

• Adds the globally-computed bias mean and rsme values in the title of climatological map plots #739
• Break Antarctic melt time series into subtasks per year #747
• Add WOA18 and SOSE obs. to time series of ocean regions #748
• Various updates to T-S diagrams #749
• Reduce the range for melt-rate plots to +/- 20 m/yr #751
• Add Rignot obs for Antarctic, FRIS, Ross #752
• Move the legend to the lower left for regional profiles #754
• Use cartopy coastline by default in polar projection plots #753
• Send melt tables to "tables" directory #757
• Build region and transect masks from geometric_features aggregation #756
• Break hovmollerOceanRegions into its own task #759

Bug fixes

• A large number fixes revealed by new deprecation warnings #736
• Use only one subprocess for MPAS-Tools mask creator #737
• Fix masking of ocean regions #740
• Switch from matplotlib-base to full matplotlib #745
• Fix anvil testsuite #755

Documentation

• Update tutorial to include HDF5_USE_FILE_LOCKING=FALSE #734

Continuous Integration

• Fix local package installation directory in Azure #744

Contributors

@xylar
@milenaveneziani

v1.2.8

Minor release.

Minor Enhancements

• Optionally, raise an error if requested input files are missing #716
• Add support for fewer than 12 ncclimo threads #727

Bug fixes

• Fix an issue with argmin with newest xarray #715
• Fix movingAveragePoints --> movingAverageMonths for hovmoller #717
• Fix --list flag #724
• Fix how colormaps are plotted #726
• Fix race condition with melt tables #725
• Use output directories for temp files/dirs #730

Documentation and Continuous Integration

• Update documentation to describe possible customizations #720
• Update docstrings to get rid of recent warnings #722
• Add a tutorial for running analysis on a QU480 run #719
• Set up CI with Azure Pipelines #728

Contributors

@xylar
@milenaveneziani

v1.2.7

Minor release.

Major Enhancement

• Add a new task for computing time series of ocean transport #680

Minor Enhancements

• Add support for log norm for T-S Diagrams #663
• Update to Scientific Colourmaps 5 #672
• Add support for making MOC basin masks on the fly #684
• Updates to Hovmoller plots #693
• Write out a csv table of Antarctic melt rates/fluxes #695
• Add ice shelves to global and sea-ice plots #698
• Use cached T/S obs. climos (when available) in T/S diagrams #703

Clean-up

• Update diagnostics path on olcf #646
• Remove utilities that have moved to pyremap #649
• Disable various Arctic/Antarctic tasks by default #666
• Update example config file and job script for anvil #678
• Rename N to movingAveragePoints in plotting #694
• Change from 'acme' to 'e3sm' for NERSC template files #696
• Change path to e3sm project on NERSC #697
• Remove dask from time series tasks #709
• Add date-stamp suffix to most region mask files #710

Bug fixes

• Support xarray 0.14.1 #662
• Change the way for checking if a symlink is needed #671
• Make regionalTSDiagram plots run after climatology #675
• Make masks for all features, not just the requested ones #679
• Compute and store regional T, S for T-S diagrams #682
• Make T-S diagram tasks run after mask tasks #685
• Restructure how region masks are computed #686
• Fix MLD climatology map #688
• Mask sea-ice bias points where no observation data is present #690
• Make obs TS climatologies more robust #689
• Fix --list flag #700
• Fix antarctic melt tables without ncclimo #702
• Disable ncclimo files from stdin #706
• Fix GM namelist option for MOC #707
• Switch simulationStartTime to xarray #705

Documentation and Continuous Integration

• Add basemap to Travis CI #650
• Update travis and build the docs as part of CI #654
• Fix build status badge #655
• Upload docs in Travis CI #659
• Point to GitHub Pages version of the docs #660
• Switch from numpydoc to sphinx.ext.napoleon #683
• Fix readme #692
• Fix missing quotes in example install in README #701
• Fix typo in README #708

Contributors

@xylar
@milenaveneziani

v1.2.6

Minor release.

Note: Support for python 2.7 has been dropped as of this release

Minor Enhancements

• Turn on Antarctic WOA18 maps by default #632
• Add config options to control xarray/dask climatology subtasks #631
• Separate shallow and deep color maps for some analysis tasks #643
• Add a cryosphere default config file #640

Clean-up

• Remove support for python 2.7 #630
• Address depricated and future warnings from xarray and numpy #629
• Move remapping functionality to pyremap package #633
• Clarify error message when files are missing #638
• Shorten image gallery text for config file name #641

Bug fixes

• Fix typo in download_natural_earth_110m entry point #626
• Fix list of plot fields for main vs. ctrl T-S diagrams #627
• Give ann and mon WOA18 output unique file names #635
• Fix config copy to HTML #637
• Fix compute/plot of regional time series of 2D ocean vars. #639

Contributors

@xylar
@milenaveneziani