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bug with extraction and featurization

Status: Open.

#346 In MannLabs/scPortrait;

· JunEiChen opened on Dec 11, 2025

add suport for zstd compression of h5sc files

enhancementNew feature or requestNew feature or request

Status: Open.

#345 In MannLabs/scPortrait;

· sophiamaedler opened on Nov 11, 2025

incorrect channel scaling in default plotting

Status: Open.

#334 In MannLabs/scPortrait;

· sophiamaedler opened on Nov 7, 2025

differences between segmentation report and cell extraction in scportrait 1.4.0.

Status: Open.

#323 In MannLabs/scPortrait;

· machth opened on Sep 4, 2025

[dependencies] extraction workflow/h5sc files fail with anndata>=0.12.0

dependencies

Status: Open.

#317 In MannLabs/scPortrait;

· machth opened on Aug 19, 2025

[BUG] graph-tool version number

Status: Open.

#314 In MannLabs/scPortrait;

· sophiamaedler opened on Aug 7, 2025

accelerate centroid calculation

Status: Open.

#289 In MannLabs/scPortrait;

· sophiamaedler opened on Apr 17, 2025

Transformations in sdata image objects not properly applied throughout scPortrait workflow

Status: Open.

#280 In MannLabs/scPortrait;

· machth opened on Apr 10, 2025

[CODE IMPROVEMENT] directly access results from spatialdata object without need to memory-mapping

Status: Open.

#218 In MannLabs/scPortrait;

· sophiamaedler opened on Feb 25, 2025

[CODE IMPROVEMENT] add support for single-cell extraction both with HDF5 and Zarr backend

Status: Open.

#217 In MannLabs/scPortrait;

· sophiamaedler opened on Feb 25, 2025

relocate existing write functions from filehandler to new module

Status: Open.

#181 In MannLabs/scPortrait;

· sophiamaedler opened on Feb 11, 2025

add module for working with spatialdata

Status: Open.

#180 In MannLabs/scPortrait;

· sophiamaedler opened on Feb 11, 2025