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Update software versions file for demultiplex #65

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Merged
merged 2 commits into from
Jan 30, 2025
Merged

Update software versions file for demultiplex #65

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df60daa
Update name of software version file
matrulda Jan 29, 2025
8bdf71b
Update unit tests
matrulda Jan 29, 2025
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6 changes: 5 additions & 1 deletion bin/get_metadata.py
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Original file line number Diff line number Diff line change
Expand Up @@ -85,7 +85,11 @@ def get_bcl2fastq_version(self, runfolder):
return bcl2fastq_str.split("v")[1].strip()

def get_software_version(self, runfolder):
with open(Path(runfolder) / "pipeline_info" / "software_versions.yml") as f:
with open(
Path(runfolder)
/ "pipeline_info"
/ "nf_core_pipeline_software_mqc_versions.yml"
) as f:
return {
software: version
for software_dict in yaml.safe_load(f).values()
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5 changes: 5 additions & 0 deletions ...0510_M03910_0104_000000000-JHGJL/pipeline_info/nf_core_pipeline_software_mqc_versions.yml
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Original file line number Diff line number Diff line change
@@ -0,0 +1,5 @@
BCL2FASTQ:
bcl2fastq: 2.20.0.422
Workflow:
nf-core/demultiplex: v1.5.4
Nextflow: 24.04.2
8 changes: 0 additions & 8 deletions test_data/210510_M03910_0104_000000000-JHGJL/pipeline_info/software_versions.yml
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This file was deleted.

6 changes: 2 additions & 4 deletions tests/unit_tests/test_get_metadata.py
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Original file line number Diff line number Diff line change
Expand Up @@ -65,10 +65,8 @@ def test_get_software_version(runfolder_info):

assert software_versions == {
"bcl2fastq": "2.20.0.422",
"python": "3.12.0",
"yaml": "6.0.1",
"Nextflow": "23.04.3",
"nf-core/demultiplex": "1.5.0dev",
"Nextflow": "24.04.2",
"nf-core/demultiplex": "v1.5.4",
}


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