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small fix to docs/notebooks/process_svd.ipynb #167

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small fix to docs/notebooks/process_svd.ipynb #167

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b33a02d
proc arg needs a dict
RobertoDF Aug 18, 2025
4b185ec
proc arg needs be a dict
RobertoDF Aug 18, 2025
7f7bd8a
Merge remote-tracking branch 'origin/main'
RobertoDF Aug 18, 2025
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11 changes: 7 additions & 4 deletions docs/notebooks/process_svd.ipynb
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Original file line number Diff line number Diff line change
Expand Up @@ -90,7 +90,8 @@
"outputs": [],
"source": [
"from facemap import process\n",
"from glob import glob"
"from glob import glob\n",
"import numpy as np"
]
},
{
Expand Down Expand Up @@ -192,13 +193,15 @@
" video_files = glob(folder+\"/*.ext\") # replace .ext with one of ['*.mj2','*.mp4','*.mkv','*.avi','*.mpeg','*.mpg','*.asf']\n",
" process.run(video_files)\n",
" # if SVDs of ROIs is required, use 'save ROIs' from GUI and use the following command\n",
" process.run(video_files, proc=\"/path_to_saved_rois\")"
" proc = np.load(\"/path_to_saved_rois\").item()\n",
" proc[\"savepath\"] = None\n",
" process.run(video_files, proc=proc)"
]
}
],
"metadata": {
"kernelspec": {
"display_name": "Python 3",
"display_name": "Python 3 (ipykernel)",
"language": "python",
"name": "python3"
},
Expand All @@ -212,7 +215,7 @@
"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
"version": "3.8.13"
"version": "3.12.9"
}
},
"nbformat": 4,
Expand Down