Upgrade to Python 3.13

[nutjob4life]

🗒️ Summary

Upgrades for Python 3.13; specifically:

• Branch CICD and CodeQL workflows now use Python 3.13
• Harmonized secrets detection between pre-commit and GitHub Actions workflow
• Disabled "black" due to its conflict with reorder-python-imports
• Updated README.md and the "Bulk Record Update" notebook to reflect the new Python version
• Modernized Sphinx docs settings for new Sphinx version and updated "Installation" section
• Removed license from Trove classifiers
• Updated dependencies for Python 3.13
• smptd was removed in Python 3.12, so substituted with aiosmtpd and adjusted message parsing to account for the change
• Replaced numerous—and I mean numerous—pkg_resources with importlib
• Updated tox.ini for Python 3.13

⚙️ Test Data and/or Report

Commands:

$ pds-doi-cmd --help
…
Usage for each subcommand is available by providing the --help argument to the subcommand:
    pds-doi-cmd reserve --help
$ pds-doi-api
…
WARNING connexion.options:openapi_console_ui_available The swagger_ui directory could not be found.
…
INFO pds_doi_service.api.__main__:main Waitress logging configured at level DEBUG
INFO waitress:log_info Serving on http://0.0.0.0:8080
^C
$ pds-doi-init --help
…
Note: When DOI records are imported to the local transaction database, the DOI service creates an associated output
label for each record under the transaction_history directory. The format of this output label is driven by the
SERVICE.provider field of the INI. Please ensure the field is set appropriately before using this script, as a
mismatch could cause parsing errors when using the DOI service after this script.

Tox:

docs: OK ✔ in 2.16 seconds
lint: commands[0]> python -m pre_commit run --color=always --all
[WARNING] hook id `tests` uses deprecated stage names (push) which will be removed in a future version.  run: `pre-commit migrate-config` to automatically fix this.
Trim Trailing Whitespace.................................................Passed
Fix End of Files.........................................................Passed
Check that executables have shebangs.....................................Passed
Check for merge conflicts................................................Passed
Debug Statements (Python)................................................Passed
Check Yaml...............................................................Passed
Reorder python imports...................................................Passed
flake8...................................................................Passed
Detect secrets...........................................................Passed
  py313: OK (11.91=setup[2.50]+cmd[9.40] seconds)
  docs: OK (2.16=setup[1.77]+cmd[0.39] seconds)
  lint: OK (2.84=setup[0.00]+cmd[2.83] seconds)
  congratulations :) (16.97 seconds)

♻️ Related Issues

• Python 3.9 EOL replacement template-repo-python#105

[sonarqubecloud]

Quality Gate passed

Issues
0 New issues
0 Accepted issues

Measures
0 Security Hotspots
0.0% Coverage on New Code
0.0% Duplication on New Code

See analysis details on SonarQube Cloud