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| 1 | +repo_name,stars,forks |
| 2 | +bioimage-io/Workshop-June2024-Madrid,4,2 |
| 3 | +Koushouu/Bioimage-Analysis-Workshop-Taipei,5,1 |
| 4 | +Koushouu/Bioimage-Analysis-Workshop-23-24,8,4 |
| 5 | +WeiChenChu/Bioimage_Analysis_ICOB_2023,1,1 |
| 6 | +German-BioImaging/RDM4mic,7,1 |
| 7 | +CellProfiler/tutorials,93,86 |
| 8 | +dwaithe/ONBI_image_analysis,18,3 |
| 9 | +guiwitz/Python_image_processing,17,11 |
| 10 | +tpecot/DeepLearningBasedSegmentationForBiologists,12,4 |
| 11 | +zeissmicroscopy/ZEN_Python_OAD_workshop,16,1 |
| 12 | +miura/ij_textbook1,7,6 |
| 13 | +mpicbg-scicomp/CourseIntroToIA,8,3 |
| 14 | +ome/omero-deployment-examples,11,12 |
| 15 | +InsightSoftwareConsortium/ITKElastix,240,26 |
| 16 | +RMS-DAIM/Python-for-Bioimage-Analysis,134,44 |
| 17 | +guiwitz/Fundamentals_image_processing,22,4 |
| 18 | +guiwitz/NumpyPandas_course,55,37 |
| 19 | +guiwitz/neubias_academy_biapy,62,35 |
| 20 | +bnsreenu/python_for_microscopists,4216,2475 |
| 21 | +VolkerH/Jupyter-Napari-Desktop,8,1 |
| 22 | +rougier/scientific-visualization-book,10926,1000 |
| 23 | +CamachoDejay/teaching-bioimage-analysis-python,17,3 |
| 24 | +CamachoDejay/Teaching-ImageJ-FIJI,4,0 |
| 25 | +jni/halfway-to-i2k-skimage-napari,6,0 |
| 26 | +scipy-2023-image-analysis/tutorial,7,8 |
| 27 | +guiwitz/DaskCourse,4,6 |
| 28 | +guiwitz/DLImaging,13,2 |
| 29 | +guiwitz/MICPy_Workshop_2022,2,0 |
| 30 | +miura/NEUBIAS_Bioimage_Analyst_Course2017,6,3 |
| 31 | +quantixed/TheDigitalCell,0,3 |
| 32 | +miura/NEUBIAS_AnalystSchool2020,13,18 |
| 33 | +miura/NEUBIAS_AnalystSchool2019,5,11 |
| 34 | +miura/NEUBIAS_AnalystSchool2018,9,5 |
| 35 | +marionlouveaux/NEUBIAS2018_TS7,0,0 |
| 36 | +miura/BIAS_Nucleus_Segmentation,0,0 |
| 37 | +miura/HTManalysisCourse,0,1 |
| 38 | +tischi/presentation-image-analysis,0,1 |
| 39 | +WhoIsJack/python-bioimage-analysis-tutorial,98,42 |
| 40 | +WhoIsJack/EMBL-CodingClub,3,4 |
| 41 | +karinsasaki/python-workshop-image-processing,31,17 |
| 42 | +karinsasaki/metabolic-networks-modelling,4,3 |
| 43 | +tischi/cellprofiler-practical-NeuBIAS-Lisbon-2017,6,2 |
| 44 | +tischi/i2k-2020-s3-zarr-workshop,0,1 |
| 45 | +datacarpentry/image-processing,106,125 |
| 46 | +kreshuklab/teaching-dl-course-2019,6,9 |
| 47 | +kreshuklab/teaching-dl-course-2023,6,5 |
| 48 | +kreshuklab/teaching-dl-course-2022,6,6 |
| 49 | +yandexdataschool/deep_vision_and_graphics,348,102 |
| 50 | +kreshuklab/predoc-course,2,2 |
| 51 | +imjoy-team/bioimage-io-resources,2,3 |
| 52 | +constantinpape/training-deep-learning-models-for-vison,8,3 |
| 53 | +constantinpape/dl-teaching-resources,4,1 |
| 54 | +JaneliaSciComp/nf-demos,2,2 |
| 55 | +JaneliaSciComp/2020AprilGitCourse,2,10 |
| 56 | +HenriquesLab/ZeroCostDL4Mic,602,137 |
| 57 | +HenriquesLab/DL4MicEverywhere,78,11 |
| 58 | +guijacquemet/CellTracksColab,44,4 |
| 59 | +tischi/image-analysis-course-material,0,0 |
| 60 | +guiwitz/PyImageCourse_beginner,34,10 |
| 61 | +ahklemm/ImageJMacro_Introduction,25,11 |
| 62 | +ahklemm/CellProfiler_Introduction,8,3 |
| 63 | +maweigert/embo_2022,0,0 |
| 64 | +maweigert/neubias_academy_stardist,31,14 |
| 65 | +maweigert/stardist-i2k,4,1 |
| 66 | +maweigert/zidas_2020_DL_intro_Part_2,0,1 |
| 67 | +holgerhennig/machine-learning-IFC,11,4 |
| 68 | +cytomining/profiling-handbook,12,7 |
| 69 | +cytomining/DeepProfiler-handbook,8,3 |
| 70 | +esgomezm/NEUBIAS_chapter_DL_2020,0,0 |
| 71 | +esgomezm/zidas2020_intro_DL,3,1 |
| 72 | +JLrumberger/DL-MBL-2021,0,3 |
| 73 | +galaxyproject/training-material,331,971 |
| 74 | +RoccoDAnt/Defragmentation_TrainingSchool_EOSC-Life_2022,7,3 |
| 75 | +hereariim/DEEP-NAPARI,0,0 |
| 76 | +BiAPoL/Bio-image_Analysis_with_Python,213,49 |
| 77 | +BiAPoL/PoL-BioImage-Analysis-TS-GPU-Accelerated-Image-Analysis,26,9 |
| 78 | +ScaDS/BIDS-lecture-2024,38,19 |
| 79 | +computational-cell-analytics/dl-for-micro,17,0 |
| 80 | +gletort/NeubiasPasteur2023_AdvancedCellPose,7,1 |
| 81 | +rmassei/2024-jn-omero-pipeline,3,0 |
| 82 | +ScaDS/BIDS-lecture-2024,38,19 |
| 83 | +NFDI4BIOIMAGE/Cologne-Hackathon-2023,1,0 |
| 84 | +ciminilab/2021_Jamali_BiologicalImaging,1,1 |
| 85 | +COBA-NIH/2023_ImageAnalysisSurvey,3,0 |
| 86 | +juglab/EmbedSeg,114,23 |
| 87 | +scipy/scipy-cookbook,473,179 |
| 88 | +InsightSoftwareConsortium/SimpleITK-Notebooks,865,354 |
| 89 | +scikit-image/skimage-tutorials,496,373 |
| 90 | +INRIA/scikit-learn-mooc,1232,556 |
| 91 | +yandexdataschool/nlp_course,10137,2644 |
| 92 | +glencoesoftware/bioformats2raw,92,36 |
| 93 | +glencoesoftware/raw2ometiff,53,23 |
| 94 | +GReD-Clermont/simple-omero-client,9,7 |
| 95 | +GReD-Clermont/omero_batch-plugin,4,1 |
| 96 | +NL-BioImaging/biomero,17,4 |
| 97 | +ome/omero-cli-transfer,17,16 |
| 98 | +ome/ome-ngff-validator,9,5 |
| 99 | +qupath/i2k-qupath-for-python-programmers,7,1 |
| 100 | +saalfeldlab/i2k2024-lazy-workshop,3,0 |
| 101 | +royerlab/ultrack-i2k2024,4,1 |
| 102 | +BIIFSweden/I2K2024-MTIWorkshop,5,0 |
| 103 | +haesleinhuepf/i2k2024-ai-code-generation,0,0 |
| 104 | +CellMigrationLab/I2K_2024,3,0 |
| 105 | +StRigaud/clesperanto_workshop_I2K24?tab=readme-ov-file,8,0 |
| 106 | +timmonko/napari-ndev,8,1 |
| 107 | +m-albert/Virtual-I2K-2024-multiview-stitcher,5,0 |
| 108 | +HelmholtzAI-Consultants-Munich/Prompt-Engineering-LLMs-Course,6,0 |
| 109 | +vibbits/introduction-to-generative-ai,4,1 |
| 110 | +vibbits/nextflow-workshop,14,13 |
| 111 | +rmassei/ymia_python_event_series_material,5,3 |
| 112 | +SaibotMagd/RDM_system_connector,0,0 |
| 113 | +deeplife4eu/Lecture-materials,15,12 |
| 114 | +NEUBIAS/training-resources,57,25 |
| 115 | +cxli233/Online_R_learning,546,113 |
| 116 | +cxli233/FriendsDontLetFriends,6741,267 |
| 117 | +ome/ome2024-ngff-challenge,19,15 |
| 118 | +KatherLab/patho_prompt_injection,1,0 |
| 119 | +RMS-DAIM/introduction-to-image-analysis,5,3 |
| 120 | +jatkinson1000/rse-skills-workshop,7,6 |
| 121 | +Graylab/DL4Proteins-notebooks,391,58 |
| 122 | +CellMigrationLab/V4SDB_Winter_School_2025,1,0 |
| 123 | +rmcelreath/stat_rethinking_2024,1559,164 |
| 124 | +scverse/scanpy-tutorials,215,117 |
| 125 | +abcucberkeley/Parallel_Fiji_Visualizer,11,2 |
| 126 | +nobias-fht/advanced-scripting,2,0 |
| 127 | +German-BioImaging/omero-ontop-mappings,1,2 |
| 128 | +NFDI4BIOIMAGE/omero-vitessce,6,0 |
| 129 | +NFDI4BIOIMAGE/LEO,0,0 |
| 130 | +SaibotMagd/dmtxSampleCreator,1,0 |
| 131 | +tstoeter/datenbiene,2,1 |
| 132 | +cmohl2013/omero-arc,3,3 |
| 133 | +DragaDoncila/napari-scipy2025-workshop,1,1 |
| 134 | +BiAPoL/TrendsInMicroscopy_2025,0,0 |
| 135 | +bioimage-io/bioimageio-chatbot,41,12 |
| 136 | +fefossa/2023_CourseImageAnalysis_NanoCell,1,0 |
| 137 | +NFDI4BIOIMAGE/BHG2023-OMERO-ARC,0,4 |
| 138 | +aicjanelia/BioImagingAI,5,1 |
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