v1.6.0

What's Changed

Subcomponent Updates

• BIOMERO.analyzer & BIOMERO.scripts: v2.6
• OMERO.BIOMERO: v1.4

Bug Fixes

• Admin config caching

  • Fixed stale config caching in BIOMERO admin
  • Each request now retrieves the latest configuration

• Get_Results dataset selection

  • Using dataset name could select the wrong dataset (OMERO allows duplicates)
  • You can now provide a dataset ID or screen ID instead of a name

• "Attach to parent" fallback

  • When no parent (project/screen) exists, attachment would fail
  • Now correctly falls back to attaching to the own dataset/plate

New Features

• In-place attachment of analyzer results*

  • .log, .zip, .csv outputs are now attached via omero_upload
  • Uses in-place attachments (symlinks to remote storage)

• Multiple plate selection for zarr-plate workflows

  • You can now select multiple input plates
  • Batching is supported again when using multiple plates

• BIAFLOW parameter improvements

  • Added support for "value-choices" in String parameters
  • Users now get a dropdown selector in OMERO.biomero / script UI

Notes

• *In-place results requires BIOMERO.importer integration: https://nl-bioimaging.github.io/NL-BIOMERO/latest/sysadmin/analyzer-importer-admin.html

Full Changelog: v1.5.0...v1.6.0
BIOMERO.analyzer: NL-BioImaging/biomero@v2.5.3...v2.6.0
BIOMERO.scripts: NL-BioImaging/biomero-scripts@v2.5.3...v2.6.0
OMERO.biomero: NL-BioImaging/OMERO.biomero@v1.3.2...v1.4.0