biomero-converter

Conversion from various formats to Ome-tiff and Ome-zarr

This tool can be used as biomero plugin, Docker container or stand-alone

Features

• Extract and process image data including bioformats unsupported formats
  • Tiff
  • Ome-zarr
  • ImageXpress Pico
  • Molecular Devices
  • CellReporterXpress experiment
  • image db files (.db)
  • isyntax files (.isyntax)
  • Incucyte archives (.icharch)
  • 3DHistech files (.mrxs)
  • DICOM files
• Export to Ome formats
  • Ome-tiff
  • Ome-zarr
• Supporting
  • (Large) whole slide images
  • Screen Plate Well / High Content Screening format
• Compatible with Omero

Documentation

nl-bioimaging.github.io/biomero-converter

Generated: deepwiki.com/NL-BioImaging/biomero-converter