Dev bilayers

biomero/constants.py

@@ -17,6 +17,7 @@
 IMAGE_EXPORT_SCRIPT = "_SLURM_Image_Transfer.py"
 IMAGE_IMPORT_SCRIPT = "SLURM_Get_Results.py"
 CONVERSION_SCRIPT = "SLURM_Remote_Conversion.py"
+FILE_TRANSFER_SCRIPT = "_SLURM_File_Transfer.py"
 RUN_WF_SCRIPT = "SLURM_Run_Workflow.py"
 RUN_WF_BATCHED_SCRIPT = "SLURM_Run_Workflow_Batched.py"
 
@@ -150,9 +151,17 @@ class transfer:
     OME_ZARR_VERSION_1_0 = '1.0'
     FOLDER = "Folder_Name"
     FOLDER_DEFAULT = 'SLURM_IMAGES_'
-
 
-class workflow_status:
+
+class file_transfer:
+    # ------------------------------------------------------------
+    # _SLURM_File_Transfer script constants
+    # ------------------------------------------------------------
+    FILE_ANNOTATION_ID = "Annotation_ID"
+    PARAM_NAME = "Param_Name"
+    FOLDER = "Folder_Name"
+
+
     INITIALIZING = "INITIALIZING"
     TRANSFERRING = "TRANSFERRING"
     CONVERTING = "CONVERTING"
@@ -162,4 +171,16 @@ class workflow_status:
     DONE = "DONE"
     FAILED = "FAILED"
     RUNNING = "RUNNING"
-    JOB_STATUS = "JOB_"
+    JOB_STATUS = "JOB_"
+
+
+class schema_formats:
+    # ------------------------------------------------------------
+    # Workflow descriptor schema format identifiers
+    # ------------------------------------------------------------
+    BIAFLOWS = "BIAFLOWS"  # cytomine-0.1 format
+    CYTOMINE = "cytomine-0.1"  # legacy name
+    BIOMERO_SCHEMA = "biomero-schema"  # new Pydantic format
+    BILAYERS = "BILAYERS"
+    CWL = "CWL"  # Common Workflow Language
+    OPENAPI = "OpenAPI"  # OpenAPI format