Skip to content
Merged
Show file tree
Hide file tree
Changes from all commits
Commits
File filter

Filter by extension

Filter by extension


Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
2 changes: 1 addition & 1 deletion .github/ISSUE_TEMPLATE/documentation-is-missing.md
Original file line number Diff line number Diff line change
Expand Up @@ -11,4 +11,4 @@ assignees: ''
If you know, please cite an issue.

**Where it should appear**
Please point to a file or a link to a particular page in https://nmrlipids.github.io/
Please point to a file or a link to a particular page in https://databank.readthedocs.io/stable/
75 changes: 0 additions & 75 deletions .github/workflows/docs.yml

This file was deleted.

2 changes: 1 addition & 1 deletion CONTRIBUTION.md
Original file line number Diff line number Diff line change
Expand Up @@ -139,4 +139,4 @@ Data contribution rules are moved there accordingly.

# Contributing data

If you would like to contribute simulations or experiments, please consult instructions for [Data Contribution](https://nmrlipids.github.io/FAIRMD_lipids/stable/dbcontribute.html).
If you would like to contribute simulations or experiments, please consult instructions for [Data Contribution](https://databank.readthedocs.io/stable/dbcontribute.html).
10 changes: 5 additions & 5 deletions README.md
Original file line number Diff line number Diff line change
@@ -1,8 +1,8 @@
# FAIRMD Lipids

[![tests status](https://img.shields.io/github/checks-status/NMRLipids/FAIRMD_lipids/main)](https://github.com/NMRLipids/FAIRMD_lipids/actions?query=branch%3Amain)
[![documentation-stable](https://img.shields.io/badge/📚_documentation-stable-sucess)](https://nmrlipids.github.io/FAIRMD_lipids/)
[![documentation-latest](https://img.shields.io/badge/📒_documentation-latest-yellow)](https://nmrlipids.github.io/FAIRMD_lipids/latest/index.html)
[![documentation-stable](https://img.shields.io/badge/📚_documentation-stable-sucess)](https://databank.readthedocs.io/stable/)
[![documentation-latest](https://img.shields.io/badge/📒_documentation-latest-yellow)](https://databank.readthedocs.io/latest/index.html)
[![coverage](https://codecov.io/gh/NMRLipids/FAIRMD_lipids/branch/main/graph/badge.svg)](https://codecov.io/gh/NMRLipids/FAIRMD_lipids)
[![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.18679885.svg)](https://doi.org/10.5281/zenodo.18679885)

Expand Down Expand Up @@ -54,7 +54,7 @@ your python code.
# Documentation

The FAIRMD Lipids project documentation is available in
[here](https://nmrlipids.github.io/FAIRMD_lipids/latest/). More information and example
[here](https://databank.readthedocs.io/). More information and example
applications are available from the [FAIRMD Lipids
manuscript](https://doi.org/10.1038/s41467-024-45189-z).

Expand All @@ -71,7 +71,7 @@ notebook](https://github.com/NMRLipids/databank-template/blob/main/scripts/templ
can be used to get started with the analyses utilizing the FAIRMD Lipids.

Connection of [Universal molecule and atom naming
conventions](https://nmrlipids.github.io/FAIRMD_lipids/latest/schemas/moleculesAndMapping.html)
conventions](https://databank.readthedocs.io/stable/schemas/moleculesAndMapping.html)
with simulation specific names delivered by mapping files can be used to perform
automatic analyses over large sets of simulations. The results for large analyses can be
stored using the same structure as used for `README.yaml` files as done, for example,
Expand Down Expand Up @@ -102,7 +102,7 @@ The [FAIRMD Upload-Portal](https://upload-portal.nmrlipids.fi) enables researche

The project is open for contributions!

Please consult [CONTRIBUTION.md](./CONTRIBUTION.md) and [Data Contribution](https://nmrlipids.github.io/FAIRMD_lipids/stable/dbcontribute.html) for further information.
Please consult [CONTRIBUTION.md](./CONTRIBUTION.md) and [Data Contribution](https://databank.readthedocs.io/stable/dbcontribute.html) for further information.

Do not hesitate contacting us via [databank@nmrlipids.fi](email:databank@nmrlipids.fi) if
you have any questions or inquiries!
2 changes: 1 addition & 1 deletion pyproject.toml
Original file line number Diff line number Diff line change
Expand Up @@ -53,7 +53,7 @@ parallel = ["joblib"]

[project.urls]
homepage = "https://FAIRMD_lipids.nmrlipids.fi"
documentation = "https://nmrlipids.github.io/FAIRMD_lipids/latest/"
documentation = "https://databank.readthedocs.io/"
repository = "https://github.com/NMRLipids/FAIRMD_lipids"
# changelog = ""
issues = "https://github.com/NMRLipids/FAIRMD_lipids/issues"
Expand Down
Original file line number Diff line number Diff line change
Expand Up @@ -48,7 +48,7 @@ SAMPLE_PROTOCOL: string # Protocol for sample preparation (in free format, refe
NMR:
T_RF_HEATING: string # Correction of the temperature according to RF heating
INSTRUMENT: string # Instrument name (including field)
METHOD: string # NMR method (e.g., "2H:QE") check https://nmrlipids.github.io/FAIRMD_lipids/stable/schemas/experiment_metadata.html#nmr-specific-fields for options
METHOD: string # NMR method (e.g., "2H:QE") check https://databank.readthedocs.io/stable/schemas/experiment_metadata.html#nmr-specific-fields for options
SIGN_MEASURED: string # Method of OP measurement "abbr1:abbr2" (see detailed explaining below)
DETAILS: string # Additional experiment details

Expand Down
Original file line number Diff line number Diff line change
@@ -1,5 +1,5 @@
# This is the template. Please refer the documentation page for the details
# https://nmrlipids.github.io/FAIRMD_lipids/latest/schemas/simulation_metadata.html
# https://databank.readthedocs.io/stable/schemas/simulation_metadata.html
# ----------------------------------------------------------------------------

SYSTEM: UNIQUE_SYSTEM_NAME
Expand Down
Loading