Ci updates

.github/actions/ngen-build/action.yaml

@@ -52,6 +52,10 @@ inputs:
       required: false
       description: 'Enable mpi support, only available for Linux runners'
       default: 'OFF'
+    build_extern:
+      required: false
+      description: 'Use external dependencies where possible'
+      default: 'OFF'
 outputs:
   build-dir:
     description: "Directory build was performed in"
@@ -110,14 +114,14 @@ runs:
           id: cache-boost-dep
           uses: actions/cache@v4
           with:
-            path: boost_1_79_0
+            path: boost_1_86_0
             key: unix-boost-dep
 
         - name: Get Boost Dependency
           if: steps.cache-boost-dep.outputs.cache-hit != 'true'
           run: |
-            curl -L -o boost_1_79_0.tar.bz2 https://sourceforge.net/projects/boost/files/boost/1.79.0/boost_1_79_0.tar.bz2/download
-            tar xjf boost_1_79_0.tar.bz2
+            curl -L -o boost_1_86_0.tar.bz2 https://sourceforge.net/projects/boost/files/boost/1.86.0/boost_1_86_0.tar.bz2/download
+            tar xjf boost_1_86_0.tar.bz2
           shell: bash
 
         - name: Set Pip Constraints
@@ -185,21 +189,36 @@ runs:
 
         - name: Cmake Initialization
           id: cmake_init
+          # NOTE: -DCMAKE_POLICY_VERSION_MINIMUM=3.5 is required to use cmake version 4
+          # and with older pybind11 versions, the minimum cmake version is set to 3.4
+          # which causes cmake configuration to fail.
           run: |
-            export BOOST_ROOT="$(pwd)/boost_1_79_0"
+            export BOOST_ROOT="$(pwd)/boost_1_86_0"
             export CFLAGS="-fsanitize=address -O1 -g -fno-omit-frame-pointer -Werror"
             export CXXFLAGS="-fsanitize=address -O1 -g -fno-omit-frame-pointer -pedantic-errors -Werror -Wpessimizing-move -Wparentheses -Wrange-loop-construct -Wsuggest-override"
+            if [ ${{ runner.os }} == 'macOS' ]
+            then
+              echo "fun:PyType_FromMetaclass" > /tmp/asan_ignore.txt
+              export CFLAGS="$CFLAGS -fsanitize-ignorelist=/tmp/asan_ignore.txt"
+              export CXXFLAGS="$CXXFLAGS -fsanitize-ignorelist=/tmp/asan_ignore.txt"
+            fi
             . .venv/bin/activate
             [ ! -d "$BOOST_ROOT" ] && echo "Error: no Boost root found at $BOOST_ROOT" && exit 1
+            echo "Cmake Version:"
+            which cmake
+            cmake --version
             cmake -B ${{ inputs.build-dir }} \
+              -DNGEN_WITH_EXTERN_ALL:BOOL=${{ inputs.build_extern }} \
               -DNGEN_WITH_BMI_C:BOOL=${{ inputs.bmi_c }} \
               -DNGEN_WITH_PYTHON:BOOL=${{ inputs.use_python }} \
               -DNGEN_WITH_UDUNITS:BOOL=${{ inputs.use_udunits }} \
               -DNGEN_WITH_BMI_FORTRAN:BOOL=${{ inputs.bmi_fortran }} \
               -DNGEN_WITH_ROUTING:BOOL=${{ inputs.use_troute }} \
               -DNGEN_WITH_NETCDF:BOOL=${{ inputs.use_netcdf }} \
               -DNGEN_WITH_SQLITE:BOOL=${{ inputs.use_sqlite }} \
-              -DNGEN_WITH_MPI:BOOL=${{ inputs.use_mpi }} -S .
+              -DNGEN_WITH_MPI:BOOL=${{ inputs.use_mpi }} \
+              -DCMAKE_POLICY_VERSION_MINIMUM=3.5 -S .
+
             echo "build-dir=$(echo ${{ inputs.build-dir }})" >> $GITHUB_OUTPUT
           shell: bash
 

.github/actions/ngen-submod-build/action.yaml

@@ -50,6 +50,8 @@ runs:
         - name: Cmake Initialization
           id: cmake_init
           run: |
+            echo CFLAGS="-fsanitize=address -O1 -g -fno-omit-frame-pointer -Werror" >> $GITHUB_ENV
+            echo CXXFLAGS="-fsanitize=address -O1 -g -fno-omit-frame-pointer -pedantic-errors -Werror -Wpessimizing-move -Wparentheses -Wrange-loop-construct -Wsuggest-override" >> $GITHUB_ENV
             cmake -B ${{ inputs.mod-dir}}/${{ inputs.build-dir }} -S ${{ inputs.mod-dir }} ${{ inputs.cmake-flags }}
             echo "build-dir=$(echo ${{ inputs.mod-dir}}/${{ inputs.build-dir }})" >> $GITHUB_OUTPUT
           shell: bash

.github/workflows/module_integration.yml

@@ -22,7 +22,7 @@ jobs:
     # The type of runner that the job will run on
     strategy:
       matrix:
-        os: [ubuntu-22.04, macos-12]
+        os: [ubuntu-22.04, macos-15]
       fail-fast: false
     runs-on: ${{ matrix.os }}
 

.github/workflows/test_and_validate.yml

@@ -24,7 +24,7 @@ jobs:
     # The type of runner that the job will run on
     strategy:
       matrix:
-        os: [ubuntu-22.04, macos-12]
+        os: [ubuntu-22.04, macos-15]
       fail-fast: false
     runs-on: ${{ matrix.os }}
 
@@ -59,7 +59,7 @@ jobs:
     # The type of runner that the job will run on
     strategy:
       matrix:
-        os: [ubuntu-22.04, macos-12]
+        os: [ubuntu-22.04, macos-15]
       fail-fast: false
     runs-on: ${{ matrix.os }}
 
@@ -116,7 +116,7 @@ jobs:
     # The type of runner that the job will run on
     strategy:
       matrix:
-        os: [ubuntu-22.04, macos-12]
+        os: [ubuntu-22.04, macos-15]
       fail-fast: false
     runs-on: ${{ matrix.os }}
 
@@ -139,6 +139,7 @@ jobs:
       - name: Run Tests
         run: |
           cd ./cmake_build/test/
+          export ASAN_OPTIONS=${ASAN_OPTIONS}:detect_odr_violation=0
           ./test_bmi_cpp
           cd ../../
         timeout-minutes: 15
@@ -151,7 +152,7 @@ jobs:
     # The type of runner that the job will run on
     strategy:
       matrix:
-        os: [ubuntu-22.04, macos-12]
+        os: [ubuntu-22.04, macos-15]
       fail-fast: false
     runs-on: ${{ matrix.os }}
 
@@ -182,7 +183,7 @@ jobs:
     # The type of runner that the job will run on
     strategy:
       matrix:
-        os: [ubuntu-22.04, macos-12]
+        os: [ubuntu-22.04, macos-15]
       fail-fast: false
     runs-on: ${{ matrix.os }}
 
@@ -215,7 +216,7 @@ jobs:
     # The type of runner that the job will run on
     strategy:
       matrix:
-        os: [ubuntu-22.04, macos-12]
+        os: [ubuntu-22.04, macos-15]
       fail-fast: false
     runs-on: ${{ matrix.os }}
 
@@ -250,7 +251,7 @@ jobs:
     # The type of runner that the job will run on
     strategy:
       matrix:
-        os: [ubuntu-22.04, macos-12]
+        os: [ubuntu-22.04, macos-15]
       fail-fast: false
     runs-on: ${{ matrix.os }}
 
@@ -272,6 +273,7 @@ jobs:
       - name: Run Unit Tests
         run: |
           . .venv/bin/activate
+          export ASAN_OPTIONS=${ASAN_OPTIONS}:detect_odr_violation=0
           ./cmake_build/test/test_bmi_multi
         timeout-minutes: 15
 
@@ -283,7 +285,7 @@ jobs:
     # The type of runner that the job will run on
     strategy:
       matrix:
-        os: [ubuntu-22.04, macos-12]
+        os: [ubuntu-22.04, macos-15]
       fail-fast: false
     runs-on: ${{ matrix.os }}
 
@@ -301,6 +303,7 @@ jobs:
       - name: run_bmi_protocol_tests
         run: |
           cd ./cmake_build/test/
+          export ASAN_OPTIONS=${ASAN_OPTIONS}:detect_odr_violation=0
           ./test_bmi_protocols
           cd ../../
         timeout-minutes: 15

CMakeLists.txt

@@ -165,7 +165,7 @@ add_compile_definitions(NGEN_SHARED_LIB_EXTENSION)
 set(Boost_USE_STATIC_LIBS OFF)
 set(Boost_USE_MULTITHREADED ON)
 set(Boost_USE_STATIC_RUNTIME OFF)
-find_package(Boost 1.79.0 REQUIRED)
+find_package(Boost 1.86.0 REQUIRED)
 
 # -----------------------------------------------------------------------------
 if(NGEN_WITH_SQLITE)

INSTALL.md

@@ -35,15 +35,15 @@ cd ngen
 **Download the Boost Libraries:**
 
 ```shell
-curl -L -o boost_1_79_0.tar.bz2 https://sourceforge.net/projects/boost/files/boost/1.79.0/boost_1_79_0.tar.bz2/download \
-    && tar -xjf boost_1_79_0.tar.bz2 \
-    && rm boost_1_79_0.tar.bz2
+curl -L -o boost_1_86_0.tar.bz2 https://sourceforge.net/projects/boost/files/boost/1.86.0/boost_1_86_0.tar.bz2/download \
+    && tar -xjf boost_1_86_0.tar.bz2 \
+    && rm boost_1_86_0.tar.bz2
 ```
 
 **Set the ENV for Boost and C compiler:**
 
 ```shell
-set BOOST_ROOT="/boost_1_79_0"
+set BOOST_ROOT="/boost_1_86_0"
 set CXX=/usr/bin/g++
 ```
 
@@ -79,7 +79,7 @@ The following CMake command will configure the build:
 
 ```shell
 cmake -DCMAKE_CXX_COMPILER=/usr/bin/g++ \
-      -DBOOST_ROOT=boost_1_79_0 \
+      -DBOOST_ROOT=boost_1_86_0 \
       -B /build \
       -S .
 ```

doc/BUILDS_AND_CMAKE.md

@@ -104,7 +104,7 @@ In some cases - in particular **Google Test** - the build system will need to be
 
 ## Boost ENV Variable
 
-The Boost libraries must be available for the project to compile.  The details are discussed more in the [Dependencies](DEPENDENCIES.md) doc, but as a helpful hint, the **BOOST_ROOT** environmental variable can be set to the path of the applicable [Boost root directory](https://www.boost.org/doc/libs/1_79_0/more/getting_started/unix-variants.html#the-boost-distribution).  The project's [CMakeLists.txt](../CMakeLists.txt) is written to check for this env variable and use it to set the Boost include directory.
+The Boost libraries must be available for the project to compile.  The details are discussed more in the [Dependencies](DEPENDENCIES.md) doc, but as a helpful hint, the **BOOST_ROOT** environmental variable can be set to the path of the applicable [Boost root directory](https://www.boost.org/doc/libs/1_86_0/more/getting_started/unix-variants.html#the-boost-distribution).  The project's [CMakeLists.txt](../CMakeLists.txt) is written to check for this env variable and use it to set the Boost include directory.
 
 Note that if the variable is not set, it may still be possible for CMake to find Boost, although a *status* message will be printed by CMake indicating **BOOST_ROOT** was not set.
 

doc/DEPENDENCIES.md

@@ -7,7 +7,7 @@
 | [Google Test](#google-test) | submodule  | `release-1.10.0` | |
 | [C/C++ Compiler](#c-and-c-compiler) | external | see below |  |
 | [CMake](#cmake) | external | \>= `3.17` | |
-| [Boost (Headers Only)](#boost-headers-only) | external | `1.79.0` | headers only library |
+| [Boost (Headers Only)](#boost-headers-only) | external | `1.86.0` | headers only library |
 | [Udunits libraries](https://www.unidata.ucar.edu/software/udunits) | external | >= 2.0 | Can be installed via package manager or from source |
 | [MPI](https://www.mpi-forum.org) | external | No current implementation or version requirements | Required for [multi-process distributed execution](DISTRIBUTED_PROCESSING.md) |
 | [Python 3 Libraries](#python-3-libraries) | external | \>= `3.8.0` | Can be [excluded](#overriding-python-dependency). |
@@ -78,7 +78,7 @@ Currently, a version of CMake >= `3.14.0` is required.
 
 ## Boost (Headers Only)
 
-Boost libraries are used by this project.  In particular, [Boost.Geometry](https://www.boost.org/doc/libs/1_79_0/libs/geometry/doc/html/geometry/compilation.html) is used, but others are also.
+Boost libraries are used by this project.  In particular, [Boost.Geometry](https://www.boost.org/doc/libs/1_86_0/libs/geometry/doc/html/geometry/compilation.html) is used, but others are also.
 
 Currently, only headers-only Boost libraries are utilized.  As such, they are not exhaustively listed here since getting one essentially gets them all.
 
@@ -88,19 +88,19 @@ Since only headers-only libraries are needed, the Boost headers simply need to b
 
 There are a variety of different ways to get the Boost headers locally.  Various OS may have packages specifically to install them, though one should take note of whether such packages provide a version of Boost that meets this project's requirements.  
 
-Alternatively, the Boost distribution itself can be manually downloaded and unpacked, as described for both [Unix-variants](https://www.boost.org/doc/libs/1_79_0/more/getting_started/unix-variants.html) and [Windows](https://www.boost.org/doc/libs/1_79_0/more/getting_started/windows.html) on the Boost website.
+Alternatively, the Boost distribution itself can be manually downloaded and unpacked, as described for both [Unix-variants](https://www.boost.org/doc/libs/1_86_0/more/getting_started/unix-variants.html) and [Windows](https://www.boost.org/doc/libs/1_86_0/more/getting_started/windows.html) on the Boost website.
 
 #### Setting **BOOST_ROOT**
 
 If necessary, the project's CMake config is able to use the value of the **BOOST_ROOT** environment variable to help it find Boost, assuming the variable is set.  It is not always required, as CMake may be able to find Boost without this, depending on how Boost was "installed."
 
 However, it will often be necessary to set **BOOST_ROOT** if Boost was manually set up by downloading the distribution.
 
-The variable should be set to the value of the **boost root directory**, which is something like `<some_path>/boost_1_79_0`.
+The variable should be set to the value of the **boost root directory**, which is something like `<some_path>/boost_1_86_0`.
 
 ### Version Requirements
 
-At present, a version >= `1.79.0` is required.
+At present, a version >= `1.86.0` is required.
 
 ## Udunits
 

docker/CENTOS_4.8.5_NGEN_RUN.dockerfile

@@ -19,11 +19,11 @@ ENV CXX=/usr/bin/g++
 
 RUN git submodule update --init --recursive -- test/googletest
 
-RUN curl -L -o boost_1_79_0.tar.bz2 https://sourceforge.net/projects/boost/files/boost/1.79.0/boost_1_79_0.tar.bz2/download
+RUN curl -L -o boost_1_86_0.tar.bz2 https://sourceforge.net/projects/boost/files/boost/1.86.0/boost_1_86_0.tar.bz2/download
 
-RUN tar -xjf boost_1_79_0.tar.bz2
+RUN tar -xjf boost_1_86_0.tar.bz2
 
-ENV BOOST_ROOT="boost_1_79_0"
+ENV BOOST_ROOT="boost_1_86_0"
 
 RUN cmake -B /ngen -S .
 

docker/CENTOS_NGEN_RUN.dockerfile

@@ -9,11 +9,11 @@ RUN yum update -y \
     && dnf clean all \
   	&& rm -rf /var/cache/yum
 
-RUN curl -L -o boost_1_79_0.tar.bz2 https://sourceforge.net/projects/boost/files/boost/1.79.0/boost_1_79_0.tar.bz2/download \
-    && tar -xjf boost_1_79_0.tar.bz2 \
-    && rm boost_1_79_0.tar.bz2
+RUN curl -L -o boost_1_86_0.tar.bz2 https://sourceforge.net/projects/boost/files/boost/1.86.0/boost_1_86_0.tar.bz2/download \
+    && tar -xjf boost_1_86_0.tar.bz2 \
+    && rm boost_1_86_0.tar.bz2
 
-ENV BOOST_ROOT="/boost_1_79_0"
+ENV BOOST_ROOT="/boost_1_86_0"
 
 ENV CXX=/usr/bin/g++
 

docker/CENTOS_TEST.dockerfile

@@ -11,11 +11,11 @@ ENV CXX=/usr/bin/g++
 
 RUN git submodule update --init --recursive -- test/googletest
 
-RUN curl -L -o boost_1_79_0.tar.bz2 https://sourceforge.net/projects/boost/files/boost/1.79.0/boost_1_79_0.tar.bz2/download
+RUN curl -L -o boost_1_86_0.tar.bz2 https://sourceforge.net/projects/boost/files/boost/1.79.0/boost_1_86_0.tar.bz2/download
 
-RUN tar -xjf boost_1_79_0.tar.bz2
+RUN tar -xjf boost_1_86_0.tar.bz2
 
-ENV BOOST_ROOT="boost_1_79_0"
+ENV BOOST_ROOT="boost_1_86_0"
 
 WORKDIR /ngen
 

docker/CENTOS_latest_NGEN_RUN.dockerfile

@@ -13,11 +13,11 @@ ENV CXX=/usr/bin/g++
 
 RUN git submodule update --init --recursive -- test/googletest
 
-RUN curl -L -o boost_1_79_0.tar.bz2 https://sourceforge.net/projects/boost/files/boost/1.79.0/boost_1_79_0.tar.bz2/download
+RUN curl -L -o boost_1_86_0.tar.bz2 https://sourceforge.net/projects/boost/files/boost/1.86.0/boost_1_86_0.tar.bz2/download
 
-RUN tar -xjf boost_1_79_0.tar.bz2
+RUN tar -xjf boost_1_86_0.tar.bz2
 
-ENV BOOST_ROOT="boost_1_79_0"
+ENV BOOST_ROOT="boost_1_86_0"
 
 WORKDIR /ngen
 

docker/RHEL_TEST.dockerfile

@@ -10,11 +10,11 @@ ENV CXX=/usr/bin/g++
 
 RUN git submodule update --init --recursive -- test/googletest
 
-RUN curl -L -o boost_1_79_0.tar.bz2 https://sourceforge.net/projects/boost/files/boost/1.79.0/boost_1_79_0.tar.bz2/download
+RUN curl -L -o boost_1_86_0.tar.bz2 https://sourceforge.net/projects/boost/files/boost/1.86.0/boost_1_86_0.tar.bz2/download
 
-RUN tar -xjf boost_1_79_0.tar.bz2
+RUN tar -xjf boost_1_86_0.tar.bz2
 
-ENV BOOST_ROOT="boost_1_79_0"
+ENV BOOST_ROOT="boost_1_86_0"
 
 WORKDIR /ngen
 

docker/ngen.dockerfile

@@ -7,7 +7,7 @@ RUN dnf update -y \
     && dnf install -y --allowerasing tar git gcc-c++ gcc make cmake udunits2-devel coreutils \
     && dnf clean all
 
-ARG BOOST_VERSION="1.79.0"
+ARG BOOST_VERSION="1.86.0"
 RUN export BOOST_ARCHIVE="boost_$(echo ${BOOST_VERSION} | tr '\.' '_').tar.gz" \
     && export BOOST_URL="https://sourceforge.net/projects/boost/files/boost/${BOOST_VERSION}/${BOOST_ARCHIVE}/download" \
     && cd / \