ESM-2 to NeMo checkpoint conversion#537
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pstjohn merged 10 commits intoNVIDIA:mainfrom Jan 22, 2025
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sichu2023
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So neat. Learned something here.
sub-packages/bionemo-esm2/tests/bionemo/esm2/model/test_convert.py
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farhadrgh
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sub-packages/bionemo-esm2/tests/bionemo/esm2/model/test_convert.py
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sub-packages/bionemo-esm2/tests/bionemo/esm2/model/test_convert.py
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Signed-off-by: Peter St. John <pstjohn@nvidia.com>
Signed-off-by: Peter St. John <pstjohn@nvidia.com>
Signed-off-by: Peter St. John <pstjohn@nvidia.com>
Signed-off-by: Peter St. John <pstjohn@nvidia.com>
Signed-off-by: Peter St. John <pstjohn@nvidia.com>
Signed-off-by: Peter St. John <pstjohn@nvidia.com>
Signed-off-by: Peter St. John <pstjohn@nvidia.com>
Signed-off-by: Peter St. John <pstjohn@nvidia.com>
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Signed-off-by: Peter St. John <pstjohn@nvidia.com>
Signed-off-by: Peter St. John <pstjohn@nvidia.com>
pstjohn
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sub-packages/bionemo-testing/src/bionemo/testing/megatron_parallel_state_utils.py
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Codecov ReportAll modified and coverable lines are covered by tests ✅
Additional details and impacted files@@ Coverage Diff @@
## main #537 +/- ##
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+ Coverage 86.63% 86.78% +0.14%
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Files 116 118 +2
Lines 6966 7044 +78
==========================================
+ Hits 6035 6113 +78
Misses 931 931
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Adds a conversion script to convert from huggingface to ESM-2 checkpoints