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R installed in home dir breaks Singularity containers

bugSomething isn't workingSomething isn't working

Status: Open.

#43 In NYU-Molecular-Pathology/NGS580-nf;

· varshini712 opened on Mar 3, 2020

Remove 'done' channels

enhancementNew feature or requestNew feature or request

Status: Open.

#42 In NYU-Molecular-Pathology/NGS580-nf;

· stevekm opened on Oct 31, 2019

Need to refactor channel create method

enhancementNew feature or requestNew feature or request

Status: Open.

#41 In NYU-Molecular-Pathology/NGS580-nf;

· stevekm opened on Oct 31, 2019

Updated samplesheets do not seem to always work correctly with 'resume'

bugSomething isn't workingSomething isn't working

enhancementNew feature or requestNew feature or request

Status: Open.

#40 In NYU-Molecular-Pathology/NGS580-nf;

· stevekm opened on Oct 29, 2019

Sometimes values loaded from JSON are not available inside processes

bugSomething isn't workingSomething isn't working

Status: Open.

#39 In NYU-Molecular-Pathology/NGS580-nf;

· stevekm opened on Oct 29, 2019

Evaluate Nextflow Tower integration

enhancementNew feature or requestNew feature or request

Status: Open.

#38 In NYU-Molecular-Pathology/NGS580-nf;

· stevekm opened on Oct 21, 2019

Need to adjust memory allocation for jobs

enhancementNew feature or requestNew feature or request

Status: Open.

#37 In NYU-Molecular-Pathology/NGS580-nf;

· stevekm opened on Oct 21, 2019

Need output validator

enhancementNew feature or requestNew feature or request

Status: Open.

#35 In NYU-Molecular-Pathology/NGS580-nf;

· stevekm opened on Oct 16, 2019

Refactor variant calling processes to use separate normalize_vcf steps

enhancementNew feature or requestNew feature or request

Status: Open.

#32 In NYU-Molecular-Pathology/NGS580-nf;

· stevekm opened on Aug 28, 2019

rename karyotype plots

enhancementNew feature or requestNew feature or request

Status: Open.

#30 In NYU-Molecular-Pathology/NGS580-nf;

· stevekm opened on Aug 26, 2019

Need scope writeup

enhancementNew feature or requestNew feature or request

Status: Open.

#29 In NYU-Molecular-Pathology/NGS580-nf;

· stevekm opened on Aug 26, 2019

re-setup vaf distribution plot

enhancementNew feature or requestNew feature or request

Status: Open.

#28 In NYU-Molecular-Pathology/NGS580-nf;

· stevekm opened on Aug 23, 2019