initial pixi docs

docs/Documentation/Environment/Customization/pixi.md

@@ -0,0 +1,135 @@
+# What is Pixi?
+
+[Pixi](https://pixi.prefix.dev/latest/) is a package management tool that attempts to unify the workflows of existing package managers such as [conda](conda.md) or [pip](https://pip.pypa.io/en/stable/) for a smoother and more robust user experience. Pixi uses the [rattler](https://github.com/prefix-dev/rattler-build/tree/main) library, a high-performance implementation of core conda functionalities (such as dependency tree solving) written in [Rust](https://rust-lang.org), leading to Pixi being significantly faster than "traditional" or "pure" conda. Pixi facilitates the management of project-specific environments which may contain a mix of packages from Python and other languages. Pixi handles both *environment creation* and *package installation*, replacing the need to use conda for the former and pip for the latter. 
+
+# Using Pixi on Kestrel
+
+Pixi is available as a module on both the CPU and GPU nodes on Kestrel:
+
+```
+$ ml help pixi
+------------------ Module Specific Help for "pixi/0.65.0" ------------------
+Name   : Pixi
+Version: 0.65.0 (built 27 February 2026)
+Source : https://github.com/prefix-dev/pixi
+Docs   : https://pixi.prefix.dev
+
+Pixi is a cross-platform, multi-language package manager and workflow tool 
+built on the foundation of the conda ecosystem. It provides developers with 
+an exceptional experience similar to popular package managers like cargo or 
+npm, but for any language.
+```
+
+Pixi is mainly designed to create environments for a specific project/working directory. Two minimal examples (one for CPU nodes, and another for GPU nodes) of creating a Pixi environment and running a script from each are provided below. NLR HPC users are encouraged to consult the [Pixi documentation](https://pixi.prefix.dev) for more information on how to get the most from Pixi.
+
+## Minimal environment example on Kestrel - CPU
+
+The following scripts represent a minimal example of using the Pixi module to 1. create a simple Pixi environment containing the `numpy` package (named `numpy-workspace`) and then 2. execute a Python script that performs a matrix multiplication 10 times (`numpy-test.py`). **Be sure to run this on a CPU node:**
+
+??? "Example: Using Pixi to create an environment and execute `numpy-test.py`"
+    Ensure that `numpy-test.py` (found in the next drop-down menu) exists one directory above `numpy-workspace` for this example.
+
+    ```bash
+    #!/bin/bash
+    # Load Pixi module
+    ml pixi
+    # Initialize Pixi environment
+    pixi init numpy-workspace
+    # Note that we navigate to the Pixi environment folder to add packages and eventually execute the Python script
+    cd numpy-workspace
+    # Add numpy and Python as dependencies
+    pixi add numpy python=3.11
+    # The Python script we wish to execute is found one directory above 'numpy-workspace'
+    pixi run python ../numpy-test.py
+
+    # Optional - cleanup numpy-workspace and PIXI_CACHE_DIR
+    #echo "Removing numpy-workspace..."
+    #cd .. && rm -rf numpy-workspace
+    #echo "Removing PIXI_CACHE_DIR..."
+    #rm -rf $PIXI_CACHE_DIR
+    ```
+
+??? "`numpy-test.py`"
+    ```python
+    import numpy as np
+    from time import time
+    from time import sleep
+    import os
+
+    print(f"Running Python script using the Pixi environment '{os.getcwd()}'")
+
+    # create random arrays as input data
+    asize = pow(10, 6)
+    array_a = np.float32(np.random.rand(asize))
+    array_b = np.float32(np.random.rand(asize))
+    array_c = np.float32(np.random.rand(asize))
+
+    matrix_a = ([array_a], [array_b], [array_c])
+    matrix_b = ([array_c], [array_b], [array_a])
+
+    # numpy - CPU
+    nloops = 10
+    t0 = time()
+    for i in np.arange(nloops):
+        np.multiply(matrix_a, matrix_b)
+    cpu_time = time()-t0
+    print("numpy on CPU required", round(cpu_time, 2), "seconds for multiplying two matrices each of size", 3*asize, "a total number of", nloops, "times.")
+    ```
+
+Note that the Python script intended to be run by this environment (`numpy-test.py`) is executed from the `numpy-workspace` folder via `pixi run python ../numpy-test.py`. After the environment is created and you navigate to the environment folder, providing the call to Python with the `pixi run ...` prefix will use the version of Python and its associated packages from the `numpy-workspace` environment. 
+
+## Minimal environment example on Kestrel - GPU
+
+The following script represents a minimal example of using the Pixi module to 1. create a simple Pixi environment containing a GPU-enabled version of `torch` (named `numpy-workspace`) and then 2. run a simple Python command that verifies whether this environment's `torch` can see a GPU device. **Be sure to run this on a GPU node:**
+
+??? "Example: Using Pixi to create a GPU-enabled PyTorch environment on Kestrel"
+    ```
+    #!/bin/bash
+    # Load Pixi module
+    ml pixi
+    # Initialize Pixi environment
+    pixi init cuda-workspace
+    # Note that we navigate to the Pixi environment folder to add packages and eventually execute the Python script
+    cd cuda-workspace
+
+    # Manually create pixi.toml
+    cat <<EOF > pixi.toml
+    [workspace]
+    channels = ["https://prefix.dev/conda-forge"]
+    name = "pytorch-conda-forge"
+    platforms = ["linux-64",]
+
+    [system-requirements]
+    cuda = "12.4"
+
+    [dependencies]
+    pytorch-gpu = "*"
+    cuda-version = ">=12.4"
+    cowpy = "*"
+    python = "3.11.*"
+    EOF
+    pixi run cowpy "MUUUUUUDA!"
+    pixi run python -c "import torch; print('Can pixi find a GPU? -->', torch.cuda.is_available(), '\n', 'Using CUDA version:', torch.version.cuda)"
+    ```
+
+Note that in this example, we specify `cuda = "12.4"` under `[system-requirements]` in the `pixi.toml`. This will allow Pixi to install a GPU-enabled version of PyTorch; without this, Pixi would install a CPU-only version of `torch`. Additionally, when creating environments from a custom `pixi.toml`, note that anything under `[dependencies]` is functionally equivalent to `pixi add <package1> <package2> ... <packageN>` as written in the [CPU example above](#minimal-environment-example-on-kestrel---cpu). At the time of writing, the GPU drivers on Kestrel are compatible with `cuda/12.4+`, so we pin `cuda-version = ">=12.4"` as a dependency accordingly as an extra insurance that we pull a compatible version of PyTorch.
+
+!!! warning "A note on performant, multi-node PyTorch on Kestrel's GPU nodes"
+    Note that installing PyTorch with the aim for good communication performance across multiple GPU nodes Kestrel requires special considerations that are not covered in this page. See [our dedicated documentation on the topic](../../Machine_Learning/index.md#installing-pytorch-on-kestrel-with-multi-node-and-gpu-support) for more information.
+
+## Package caching location
+
+On Kestrel, the Pixi modules are designed to cache downloaded packages to `/scratch/${USER}/.cache/rattler` by default. This saves users storage space in their `/home` or `/projects` folders, though this may be overridden by users by modifying and exporting the `PIXI_CACHE_DIR` environment variable after loading the module.
+
+To save space in your personal `/scratch`, you may safely run `rm -rf /scratch/${USER}/.cache/rattler` at any time to clear this cache directory.
+
+## Tips and tricks for using Pixi on Kestrel
+
+**Coming soon!**
+
+# Useful links
+
+- [Managing Python Environments with Pixi-From Laptop to HPC](https://nrel-my.sharepoint.com/:v:/g/personal/chschwin_nrel_gov/IQAr0Zstq-bQSZ5nkfcd-eXDAT_GOjhkcPXWHa6S2XRympU) (NLR HPC Tutorial series - requires access to CSC Tutorials Teams channel)
+- [Switching from Conda/Mamba to Pixi](https://pixi.prefix.dev/latest/switching_from/conda/) (external site)
+- [PyTorch installation with Pixi](https://pixi.prefix.dev/latest/python/pytorch/) (external site)
+- [Building custom packages with Pixi](https://pixi.prefix.dev/latest/build/getting_started/) (external site)

mkdocs.yml

@@ -71,6 +71,7 @@ nav:
           - Lmod: Documentation/Environment/lmod.md
           # - Customization:
           - Conda: Documentation/Environment/Customization/conda.md
+          - Pixi: Documentation/Environment/Customization/pixi.md
           - Building an Application: 
             - Documentation/Environment/Building_Packages/index.md
             - Documentation/Environment/Building_Packages/acquire.md