QCAlign supports systematic post-processing of QUINT results (https://quint-workflow.readthedocs.io). It was developed by the Neural Systems Laboratory at the Institute of Basic Medical Sciences at the University of Oslo in Norway, in collaboration with the Kaczorowski Lab at the Jackson Laboratory in Bar Harbor, Maine, USA.
Currently QCAlign supports the Allen Mouse Brain Atlas CCFv3, 2015 and 2017 and the Waxholm Space Atlas of the Spraque Dawley Rat v2, v3 and v4.
https://www.nitrc.org/frs/?group_id=1587
v0.8
https://qcalign.readthedocs.io/
- Programming: Gergely Csucs
- Conception, design, validation: Sharon C Yates, Brianna Gurdon, Maja Puchades, Catherine Kaczorowski, Jan Bjaalie.
GNU General Public License version 3.
QCAlign (RRID:SCR_023088)
- Gurdon, B., Yates, S.C., Csucs, G. et al. Detecting the effect of genetic diversity on brain composition in an Alzheimer’s disease mouse model. Commun Biol 7, 605 (2024). https://doi.org/10.1038/s42003-024-06242-1
How to cite the reference atlases used in the tool:
-
Allen Mouse Brain Atlas: © 2004 Allen Institute for Brain Science. Allen Mouse Brain Atlas. Available from: http://download.alleninstitute.org/informatics-archive/current-release/mouse_ccf/annotation/.
-
Waxholm Space atlas of the Sprague Dawley rat brain version 2 , 3 and 4: RRID: SCR_017124; Papp et al., NeuroImage 97, 374-386, 2014; Papp et al., NeuroImage 105, 561–562, 2015; Kjonigsen et al., NeuroImage 108, 441-449, 2015; Osen et al., NeuroImage 199, 38-56, 2019; Kleven et al., Nature Methods 20, 1822–1829 (2023).
QCAlign is developed by the Neural Systems Laboratory at the Institute of Basic Medical Sciences, University of Oslo, Norway. QCAlign was developed with support from the EBRAINS infrastructure, and funding from the European Union’s Horizon 2020 Framework Programme for Research and Innovation under the Framework Partnership Agreement No. 650003 (HBP FPA).
Report issues here on Github or email: [email protected]